Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-09-22 22:39:35 (2000): Detected: vboxwrapper 26206
2024-09-22 22:39:35 (2000): Detected: BOINC client v7.16.5
2024-09-22 22:39:36 (2000): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-09-22 22:39:36 (2000): Successfully copied 'init_data.xml' to the shared directory.
2024-09-22 22:39:37 (2000): Create VM. (boinc_85749b493f9ef44e, slot#3)
2024-09-22 22:39:37 (2000): Setting Memory Size for VM. (4400MB)
2024-09-22 22:39:37 (2000): Setting CPU Count for VM. (4)
2024-09-22 22:39:38 (2000): Setting Chipset Options for VM.
2024-09-22 22:39:38 (2000): Setting Graphics Controller Options for VM.
2024-09-22 22:39:38 (2000): Setting Boot Options for VM.
2024-09-22 22:39:38 (2000): Setting Network Configuration for NAT.
2024-09-22 22:39:39 (2000): Enabling VM Network Access.
2024-09-22 22:39:39 (2000): Disabling USB Support for VM.
2024-09-22 22:39:39 (2000): Disabling COM Port Support for VM.
2024-09-22 22:39:39 (2000): Disabling LPT Port Support for VM.
2024-09-22 22:39:40 (2000): Disabling Audio Support for VM.
2024-09-22 22:39:40 (2000): Disabling Clipboard Support for VM.
2024-09-22 22:39:40 (2000): Disabling Drag and Drop Support for VM.
2024-09-22 22:39:40 (2000): Adding storage controller(s) to VM.
2024-09-22 22:39:41 (2000): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-09-22 22:39:41 (2000): Adding VirtualBox Guest Additions to VM.
2024-09-22 22:39:42 (2000): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-09-22 22:39:42 (2000): forwarding host port 52905 to guest port 80
2024-09-22 22:39:42 (2000): Enabling remote desktop for VM.
2024-09-22 22:39:43 (2000): Enabling shared directory for VM.
2024-09-22 22:39:43 (2000): Starting VM using VBoxManage interface. (boinc_85749b493f9ef44e, slot#3)
2024-09-22 22:39:47 (2000): Successfully started VM. (PID = '1104')
2024-09-22 22:39:47 (2000): Reporting VM Process ID to BOINC.
2024-09-22 22:39:47 (2000): Guest Log: BIOS: VirtualBox 5.2.44
2024-09-22 22:39:47 (2000): Guest Log: CPUID EDX: 0x178bfbff
2024-09-22 22:39:47 (2000): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-09-22 22:39:47 (2000): VM state change detected. (old = 'poweredoff', new = 'running')
2024-09-22 22:39:47 (2000): Detected: Web Application Enabled (http://localhost:52905)
2024-09-22 22:39:47 (2000): Detected: Remote Desktop Enabled (localhost:52906)
2024-09-22 22:39:47 (2000): Preference change detected
2024-09-22 22:39:47 (2000): Setting CPU throttle for VM. (100%)
2024-09-22 22:39:47 (2000): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-22 22:39:49 (2000): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-09-22 22:39:49 (2000): Guest Log: BIOS: Booting from Hard Disk...
2024-09-22 22:39:52 (2000): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-09-22 22:39:52 (2000): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-09-22 22:39:52 (2000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-09-22 22:39:56 (2000): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-09-22 22:39:56 (2000): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-09-22 22:40:01 (2000): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-09-22 22:40:01 (2000): Guest Log: 00:00:00.000165 main     Log opened 2024-09-22T22:39:59.392302000Z
2024-09-22 22:40:01 (2000): Guest Log: 00:00:00.000252 main     OS Product: Linux
2024-09-22 22:40:01 (2000): Guest Log: 00:00:00.000281 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-09-22 22:40:01 (2000): Guest Log: 00:00:00.000304 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-09-22 22:40:01 (2000): Guest Log: 00:00:00.000324 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-09-22 22:40:01 (2000): Guest Log: 00:00:00.000325 main     Process ID: 1305
2024-09-22 22:40:01 (2000): Guest Log: 00:00:00.000326 main     Package type: LINUX_64BITS_GENERIC
2024-09-22 22:40:01 (2000): Guest Log: 00:00:00.001211 main     5.2.32 r132073 started. Verbose level = 0
2024-09-22 22:40:01 (2000): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-09-22 22:40:01 (2000): Guest Log: [INFO] Mounting shared directory
2024-09-22 22:40:01 (2000): Guest Log: [INFO] Checking for init_data.xml
2024-09-22 22:40:04 (2000): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-09-22 22:40:04 (2000): Guest Log: [INFO] Detected branch: prod
2024-09-22 22:40:04 (2000): Guest Log: This is the prod version of the ATLAS job wrapper
2024-09-22 22:40:04 (2000): Guest Log: Copying input files
2024-09-22 22:40:07 (2000): Guest Log: Copied input files into RunAtlas.
2024-09-22 22:40:07 (2000): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-09-22 22:40:07 (2000): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-09-22 22:40:07 (2000): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-09-22 22:40:07 (2000): Guest Log: Further information can be found at the LHC@home message board.
2024-09-22 22:40:11 (2000): Guest Log: 00:00:10.006242 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 098 215 000ns (GuestNow=1 727 034 011 296 563 000 ns GuestLast=1 727 044 799 394 778 000 ns fSetTimeLastLoop=true )
2024-09-22 22:40:15 (2000): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-09-22 22:40:15 (2000): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-09-22 22:40:15 (2000): Guest Log: 2.6.3.0 1598 0 32224 137533 4 1 3117302 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-09-22 22:40:16 (2000): Guest Log: copied the webapp to /var/www
2024-09-22 22:40:16 (2000): Guest Log: ATHENA_PROC_NUMBER=4
2024-09-22 22:40:16 (2000): Guest Log: ATHENA_CORE_NUMBER=4
2024-09-22 22:40:16 (2000): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-09-22 22:40:16 (2000): Guest Log:  *** Starting ATLAS job. (PandaID=6341238659 taskID=41078631) ***
2024-09-23 00:19:51 (2000): Status Report: Elapsed Time: '6000.000000'
2024-09-23 00:19:51 (2000): Status Report: CPU Time: '17579.500000'
2024-09-23 00:21:24 (2000): Preference change detected
2024-09-23 00:21:24 (2000): Setting CPU throttle for VM. (100%)
2024-09-23 00:21:24 (2000): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-23 01:37:46 (2000): Guest Log:  *** Job finished ***
2024-09-23 01:37:46 (2000): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:33,579 | INFO     | [data] queue_monitor thread has finished
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:37,340 | INFO     | job.realtimelogging is not enabled
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:38,348 | INFO     | [payload] run_realtimelog thread has finished
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:38,947 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139922975106880)>', '<ExcThread(monitor, started 139922308589312)>']
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:39,764 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:39,764 | INFO     | [monitor] control thread has ended
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:43,951 | INFO     | all workflow threads have been joined
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:43,951 | INFO     | end of generic workflow (traces error code: 0)
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:43,951 | INFO     | traces error code: 0
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:43,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,066 [wrapper] ==== pilot stdout END ====
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,072 [wrapper] ==== wrapper stdout RESUME ====
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,077 [wrapper] pilotpid: 5905
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,081 [wrapper] Pilot exit status: 0
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,155 [wrapper] pandaids: 6341238659
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,183 [wrapper] cleanup supervisor_pilot  7217 5906
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,191 [wrapper] Test setup, not cleaning
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,195 [wrapper] ==== wrapper stdout END ====
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,200 [wrapper] ==== wrapper stderr END ====
2024-09-23 01:37:46 (2000): Guest Log: 2024-09-22 22:37:44,209 [wrapper] apfmon messages muted
2024-09-23 01:37:46 (2000): Guest Log:  *** Error codes and diagnostics ***
2024-09-23 01:37:46 (2000): Guest Log:     "exeErrorCode": 0,
2024-09-23 01:37:46 (2000): Guest Log:     "exeErrorDiag": "",
2024-09-23 01:37:46 (2000): Guest Log:     "pilotErrorCode": 0,
2024-09-23 01:37:46 (2000): Guest Log:     "pilotErrorDiag": "",
2024-09-23 01:37:46 (2000): Guest Log:  *** Listing of results directory ***
2024-09-23 01:37:46 (2000): Guest Log: total 163572
2024-09-23 01:37:46 (2000): Guest Log: -rw-r--r--. 1 atlas atlas    482533 Sep 22 09:00 pilot3.tar.gz
2024-09-23 01:37:46 (2000): Guest Log: -rwx------. 1 atlas atlas     33679 Sep 22 09:12 runpilot2-wrapper.sh
2024-09-23 01:37:46 (2000): Guest Log: -rw-r--r--. 1 atlas atlas      5655 Sep 22 09:12 queuedata.json
2024-09-23 01:37:46 (2000): Guest Log: -rwxr-xr-x. 1 atlas atlas      9019 Sep 22 19:40 init_data.xml
2024-09-23 01:37:46 (2000): Guest Log: -rwxr-xr-x. 1 atlas atlas    495958 Sep 22 19:40 input.tar.gz
2024-09-23 01:37:46 (2000): Guest Log: -rwxr-xr-x. 1 atlas atlas     17539 Sep 22 19:40 start_atlas.sh
2024-09-23 01:37:46 (2000): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Sep 22 19:40 EVNT.41078629._000647.pool.root.1 -> /data/./ATLAS.root_0
2024-09-23 01:37:46 (2000): Guest Log: -rw-r--r--. 1 atlas atlas      2555 Sep 22 19:40 pandaJob.out
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas       424 Sep 22 19:40 setup.sh.local
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas   1009478 Sep 22 19:40 agis_schedconf.cvmfs.json
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas   1618603 Sep 22 19:40 agis_ddmendpoints.agis.ALL.json
2024-09-23 01:37:46 (2000): Guest Log: drwx------. 4 atlas atlas      4096 Sep 22 19:40 pilot3
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas 161313967 Sep 22 22:36 HITS.41078631._016239.pool.root.1
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas        95 Sep 22 22:36 pilot_heartbeat.json
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas      1045 Sep 22 22:37 memory_monitor_summary.json
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas    292135 Sep 22 22:37 log.41078631._016239.job.log.tgz.1
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas      7742 Sep 22 22:37 heartbeat.json
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas      4347 Sep 22 22:37 pilotlog.txt
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas    908114 Sep 22 22:37 log.41078631._016239.job.log.1
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas       357 Sep 22 22:37 output.list
2024-09-23 01:37:46 (2000): Guest Log: -rw-r--r--. 1 atlas atlas       620 Sep 22 22:37 runtime_log
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas   1218560 Sep 22 22:37 result.tar.gz
2024-09-23 01:37:46 (2000): Guest Log: -rw-r--r--. 1 atlas atlas     10968 Sep 22 22:37 runtime_log.err
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas       659 Sep 22 22:37 qcPODmjoXC6n7OlckoGmwREmGgkVDo1bjSoqOlfODmCynKDmx3nBWo.diag
2024-09-23 01:37:46 (2000): Guest Log: Looking for outputfile HITS.41078631._016239.pool.root.1
2024-09-23 01:37:46 (2000): Guest Log: HITS file was successfully produced
2024-09-23 01:37:46 (2000): Guest Log: -rw-------. 1 atlas atlas 161313967 Sep 22 22:36 /home/atlas/RunAtlas/HITS.41078631._016239.pool.root.1
2024-09-23 01:37:47 (2000): Guest Log: Successfully finished the ATLAS job!
2024-09-23 01:37:47 (2000): Guest Log: Copying the results back to the shared directory!
2024-09-23 01:37:47 (2000): Guest Log:  *** Contents of shared directory: ***
2024-09-23 01:37:47 (2000): Guest Log: total 588128
2024-09-23 01:37:47 (2000): Guest Log: -rwxrwxrwx. 1 root root 439169717 Sep 22 19:39 ATLAS.root_0
2024-09-23 01:37:47 (2000): Guest Log: -rwxrwxrwx. 1 root root 161313967 Sep 22 22:37 HITS.pool.root.1
2024-09-23 01:37:47 (2000): Guest Log: -rwxrwxrwx. 1 root root      9019 Sep 22 19:39 init_data.xml
2024-09-23 01:37:47 (2000): Guest Log: -rwxrwxrwx. 1 root root    495958 Sep 22 11:30 input.tar.gz
2024-09-23 01:37:47 (2000): Guest Log: -rwxrwxrwx. 1 root root   1218560 Sep 22 22:37 result.tar.gz
2024-09-23 01:37:47 (2000): Guest Log: -rwxrwxrwx. 1 root root     17539 Sep 22 11:30 start_atlas.sh
2024-09-23 01:37:47 (2000): Guest Log:  *** Success! Shutting down the machine. ***
2024-09-23 01:37:47 (2000): VM Completion File Detected.
2024-09-23 01:37:47 (2000): Powering off VM.
2024-09-23 01:37:47 (2000): Successfully stopped VM.
2024-09-23 01:37:47 (2000): Deregistering VM. (boinc_85749b493f9ef44e, slot#3)
2024-09-23 01:37:47 (2000): Removing network bandwidth throttle group from VM.
2024-09-23 01:37:48 (2000): Removing VM from VirtualBox.
01:37:53 (2000): called boinc_finish(0)

</stderr_txt>
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