Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-09-22 17:43:11 (4536): Detected: vboxwrapper 26206
2024-09-22 17:43:11 (4536): Detected: BOINC client v7.16.5
2024-09-22 17:43:12 (4536): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-09-22 17:43:12 (4536): Successfully copied 'init_data.xml' to the shared directory.
2024-09-22 17:43:12 (4536): Create VM. (boinc_43e7adb3856d173a, slot#2)
2024-09-22 17:43:13 (4536): Setting Memory Size for VM. (4400MB)
2024-09-22 17:43:13 (4536): Setting CPU Count for VM. (4)
2024-09-22 17:43:13 (4536): Setting Chipset Options for VM.
2024-09-22 17:43:14 (4536): Setting Graphics Controller Options for VM.
2024-09-22 17:43:14 (4536): Setting Boot Options for VM.
2024-09-22 17:43:14 (4536): Setting Network Configuration for NAT.
2024-09-22 17:43:14 (4536): Enabling VM Network Access.
2024-09-22 17:43:15 (4536): Disabling USB Support for VM.
2024-09-22 17:43:15 (4536): Disabling COM Port Support for VM.
2024-09-22 17:43:15 (4536): Disabling LPT Port Support for VM.
2024-09-22 17:43:16 (4536): Disabling Audio Support for VM.
2024-09-22 17:43:16 (4536): Disabling Clipboard Support for VM.
2024-09-22 17:43:16 (4536): Disabling Drag and Drop Support for VM.
2024-09-22 17:43:16 (4536): Adding storage controller(s) to VM.
2024-09-22 17:43:17 (4536): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-09-22 17:43:17 (4536): Adding VirtualBox Guest Additions to VM.
2024-09-22 17:43:17 (4536): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-09-22 17:43:18 (4536): forwarding host port 50564 to guest port 80
2024-09-22 17:43:18 (4536): Enabling remote desktop for VM.
2024-09-22 17:43:18 (4536): Enabling shared directory for VM.
2024-09-22 17:43:19 (4536): Starting VM using VBoxManage interface. (boinc_43e7adb3856d173a, slot#2)
2024-09-22 17:43:24 (4536): Successfully started VM. (PID = '9992')
2024-09-22 17:43:24 (4536): Reporting VM Process ID to BOINC.
2024-09-22 17:43:24 (4536): Guest Log: BIOS: VirtualBox 5.2.44
2024-09-22 17:43:24 (4536): Guest Log: CPUID EDX: 0x178bfbff
2024-09-22 17:43:24 (4536): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-09-22 17:43:24 (4536): VM state change detected. (old = 'poweredoff', new = 'running')
2024-09-22 17:43:24 (4536): Detected: Web Application Enabled (http://localhost:50564)
2024-09-22 17:43:24 (4536): Detected: Remote Desktop Enabled (localhost:50565)
2024-09-22 17:43:24 (4536): Preference change detected
2024-09-22 17:43:24 (4536): Setting CPU throttle for VM. (100%)
2024-09-22 17:43:24 (4536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-22 17:43:26 (4536): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-09-22 17:43:26 (4536): Guest Log: BIOS: Booting from Hard Disk...
2024-09-22 17:43:29 (4536): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-09-22 17:43:29 (4536): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-09-22 17:43:29 (4536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-09-22 17:43:35 (4536): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-09-22 17:43:35 (4536): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-09-22 17:43:41 (4536): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-09-22 17:43:41 (4536): Guest Log: 00:00:00.000185 main     Log opened 2024-09-22T17:43:39.532188000Z
2024-09-22 17:43:41 (4536): Guest Log: 00:00:00.000295 main     OS Product: Linux
2024-09-22 17:43:41 (4536): Guest Log: 00:00:00.000333 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-09-22 17:43:41 (4536): Guest Log: 00:00:00.000364 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-09-22 17:43:41 (4536): Guest Log: 00:00:00.000390 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-09-22 17:43:41 (4536): Guest Log: 00:00:00.000391 main     Process ID: 1306
2024-09-22 17:43:41 (4536): Guest Log: 00:00:00.000392 main     Package type: LINUX_64BITS_GENERIC
2024-09-22 17:43:41 (4536): Guest Log: 00:00:00.001507 main     5.2.32 r132073 started. Verbose level = 0
2024-09-22 17:43:41 (4536): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-09-22 17:43:41 (4536): Guest Log: [INFO] Mounting shared directory
2024-09-22 17:43:41 (4536): Guest Log: [INFO] Checking for init_data.xml
2024-09-22 17:43:44 (4536): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-09-22 17:43:44 (4536): Guest Log: [INFO] Detected branch: prod
2024-09-22 17:43:44 (4536): Guest Log: This is the prod version of the ATLAS job wrapper
2024-09-22 17:43:44 (4536): Guest Log: Copying input files
2024-09-22 17:43:47 (4536): Guest Log: Copied input files into RunAtlas.
2024-09-22 17:43:47 (4536): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-09-22 17:43:47 (4536): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-09-22 17:43:47 (4536): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-09-22 17:43:47 (4536): Guest Log: Further information can be found at the LHC@home message board.
2024-09-22 17:43:51 (4536): Guest Log: 00:00:10.006036 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 789 704 000ns (GuestNow=1 727 016 230 747 141 000 ns GuestLast=1 727 027 019 536 845 000 ns fSetTimeLastLoop=true )
2024-09-22 17:43:55 (4536): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-09-22 17:43:55 (4536): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-09-22 17:43:55 (4536): Guest Log: 2.6.3.0 1581 0 30160 137526 4 1 3117432 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-09-22 17:43:56 (4536): Guest Log: copied the webapp to /var/www
2024-09-22 17:43:56 (4536): Guest Log: ATHENA_PROC_NUMBER=4
2024-09-22 17:43:56 (4536): Guest Log: ATHENA_CORE_NUMBER=4
2024-09-22 17:43:56 (4536): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-09-22 17:43:56 (4536): Guest Log:  *** Starting ATLAS job. (PandaID=6342111685 taskID=41078623) ***
2024-09-22 19:00:01 (4536): VM state change detected. (old = 'running', new = 'paused')
2024-09-22 21:00:02 (4536): VM state change detected. (old = 'paused', new = 'running')
2024-09-22 21:00:03 (4536): Guest Log: 01:16:21.631892 timesync vgsvcTimeSyncWorker: Radical host time change: 7 210 601 000 000ns (HostNow=1 727 028 002 972 000 000 ns HostLast=1 727 020 792 371 000 000 ns)
2024-09-22 21:00:13 (4536): Guest Log: 01:16:31.640045 timesync vgsvcTimeSyncWorker: Radical guest time change: 7 210 607 291 000ns (GuestNow=1 727 028 012 980 238 000 ns GuestLast=1 727 020 802 372 947 000 ns fSetTimeLastLoop=true )
2024-09-22 21:23:29 (4536): Status Report: Elapsed Time: '6000.000000'
2024-09-22 21:23:29 (4536): Status Report: CPU Time: '20359.390625'
2024-09-22 22:27:48 (4536): Guest Log:  *** Job finished ***
2024-09-22 22:27:48 (4536): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:38,205 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:38,342 | INFO     | [payload] validate_pre thread has finished
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:42,241 | INFO     | [data] queue_monitor thread has finished
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:42,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639756740416)>', '<ExcThread(monitor, started 140638494385920)>']
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:43,207 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:43,208 | INFO     | [monitor] control thread has ended
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:47,817 | INFO     | all workflow threads have been joined
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:47,817 | INFO     | end of generic workflow (traces error code: 0)
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:47,817 | INFO     | traces error code: 0
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:47,818 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:47,930 [wrapper] ==== pilot stdout END ====
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:47,935 [wrapper] ==== wrapper stdout RESUME ====
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:47,939 [wrapper] pilotpid: 5905
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:47,944 [wrapper] Pilot exit status: 0
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:48,055 [wrapper] pandaids: 6342111685
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:48,085 [wrapper] cleanup supervisor_pilot 10145 5906
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:48,089 [wrapper] Test setup, not cleaning
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:48,095 [wrapper] ==== wrapper stdout END ====
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:48,100 [wrapper] ==== wrapper stderr END ====
2024-09-22 22:27:48 (4536): Guest Log: 2024-09-22 19:27:48,111 [wrapper] apfmon messages muted
2024-09-22 22:27:48 (4536): Guest Log:  *** Error codes and diagnostics ***
2024-09-22 22:27:48 (4536): Guest Log:     "exeErrorCode": 0,
2024-09-22 22:27:48 (4536): Guest Log:     "exeErrorDiag": "",
2024-09-22 22:27:48 (4536): Guest Log:     "pilotErrorCode": 0,
2024-09-22 22:27:48 (4536): Guest Log:     "pilotErrorDiag": "",
2024-09-22 22:27:48 (4536): Guest Log:  *** Listing of results directory ***
2024-09-22 22:27:48 (4536): Guest Log: total 163152
2024-09-22 22:27:48 (4536): Guest Log: -rw-r--r--. 1 atlas atlas    482533 Sep 22 06:00 pilot3.tar.gz
2024-09-22 22:27:48 (4536): Guest Log: -rw-r--r--. 1 atlas atlas      5655 Sep 22 06:03 queuedata.json
2024-09-22 22:27:48 (4536): Guest Log: -rwx------. 1 atlas atlas     33679 Sep 22 06:04 runpilot2-wrapper.sh
2024-09-22 22:27:48 (4536): Guest Log: -rwxr-xr-x. 1 atlas atlas      9020 Sep 22 14:43 init_data.xml
2024-09-22 22:27:48 (4536): Guest Log: -rwxr-xr-x. 1 atlas atlas    495960 Sep 22 14:43 input.tar.gz
2024-09-22 22:27:48 (4536): Guest Log: -rwxr-xr-x. 1 atlas atlas     17539 Sep 22 14:43 start_atlas.sh
2024-09-22 22:27:48 (4536): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Sep 22 14:43 EVNT.41078621._000918.pool.root.1 -> /data/./ATLAS.root_0
2024-09-22 22:27:48 (4536): Guest Log: -rw-r--r--. 1 atlas atlas      2561 Sep 22 14:43 pandaJob.out
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas       424 Sep 22 14:43 setup.sh.local
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas   1009491 Sep 22 14:44 agis_schedconf.cvmfs.json
2024-09-22 22:27:48 (4536): Guest Log: drwx------. 4 atlas atlas      4096 Sep 22 14:44 pilot3
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas 161151890 Sep 22 19:26 HITS.41078623._026809.pool.root.1
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas      1032 Sep 22 19:27 memory_monitor_summary.json
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas   1618603 Sep 22 19:27 agis_ddmendpoints.agis.ALL.json
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas    276753 Sep 22 19:27 log.41078623._026809.job.log.tgz.1
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas        97 Sep 22 19:27 pilot_heartbeat.json
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas      7739 Sep 22 19:27 heartbeat.json
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas      4275 Sep 22 19:27 pilotlog.txt
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas    794018 Sep 22 19:27 log.41078623._026809.job.log.1
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas       357 Sep 22 19:27 output.list
2024-09-22 22:27:48 (4536): Guest Log: -rw-r--r--. 1 atlas atlas       620 Sep 22 19:27 runtime_log
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas   1085440 Sep 22 19:27 result.tar.gz
2024-09-22 22:27:48 (4536): Guest Log: -rw-r--r--. 1 atlas atlas     10968 Sep 22 19:27 runtime_log.err
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas       659 Sep 22 19:27 NeKKDmhsUC6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmdTeKDmvrpurm.diag
2024-09-22 22:27:48 (4536): Guest Log: Looking for outputfile HITS.41078623._026809.pool.root.1
2024-09-22 22:27:48 (4536): Guest Log: HITS file was successfully produced
2024-09-22 22:27:48 (4536): Guest Log: -rw-------. 1 atlas atlas 161151890 Sep 22 19:26 /home/atlas/RunAtlas/HITS.41078623._026809.pool.root.1
2024-09-22 22:27:49 (4536): Guest Log: Successfully finished the ATLAS job!
2024-09-22 22:27:49 (4536): Guest Log: Copying the results back to the shared directory!
2024-09-22 22:27:49 (4536): Guest Log:  *** Contents of shared directory: ***
2024-09-22 22:27:49 (4536): Guest Log: total 586332
2024-09-22 22:27:49 (4536): Guest Log: -rwxrwxrwx. 1 root root 437630449 Sep 22 14:43 ATLAS.root_0
2024-09-22 22:27:49 (4536): Guest Log: -rwxrwxrwx. 1 root root 161151890 Sep 22 19:27 HITS.pool.root.1
2024-09-22 22:27:49 (4536): Guest Log: -rwxrwxrwx. 1 root root      9020 Sep 22 14:43 init_data.xml
2024-09-22 22:27:49 (4536): Guest Log: -rwxrwxrwx. 1 root root    495960 Sep 22 08:28 input.tar.gz
2024-09-22 22:27:49 (4536): Guest Log: -rwxrwxrwx. 1 root root   1085440 Sep 22 19:27 result.tar.gz
2024-09-22 22:27:49 (4536): Guest Log: -rwxrwxrwx. 1 root root     17539 Sep 22 08:28 start_atlas.sh
2024-09-22 22:27:49 (4536): Guest Log:  *** Success! Shutting down the machine. ***
2024-09-22 22:27:49 (4536): VM Completion File Detected.
2024-09-22 22:27:49 (4536): Powering off VM.
2024-09-22 22:27:50 (4536): Successfully stopped VM.
2024-09-22 22:27:50 (4536): Deregistering VM. (boinc_43e7adb3856d173a, slot#2)
2024-09-22 22:27:50 (4536): Removing network bandwidth throttle group from VM.
2024-09-22 22:27:50 (4536): Removing VM from VirtualBox.
22:27:55 (4536): called boinc_finish(0)

</stderr_txt>
]]>

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