Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
20:23:09 (549584): wrapper (7.7.26015): starting
20:23:09 (549584): wrapper: running run_atlas (--nthreads 4)
[2024-09-21 20:23:09] Arguments: --nthreads 4
[2024-09-21 20:23:09] Threads: 4
[2024-09-21 20:23:09] Checking for CVMFS
[2024-09-21 20:23:09] Probing /cvmfs/atlas.cern.ch... OK
[2024-09-21 20:23:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-09-21 20:23:09] Running cvmfs_config stat atlas.cern.ch
[2024-09-21 20:23:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-09-21 20:23:09] 2.11.4.0 12539 1301 61468 137495 0 187 2288588 4096000 909 130560 0 2057745 99.994 306960 3428 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2024-09-21 20:23:09] CVMFS is ok
[2024-09-21 20:23:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-09-21 20:23:09] Checking for apptainer binary...
[2024-09-21 20:23:09] Using apptainer found in PATH at /usr/bin/apptainer
[2024-09-21 20:23:09] Running /usr/bin/apptainer --version
[2024-09-21 20:23:09] apptainer version 1.3.3
[2024-09-21 20:23:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-09-21 20:23:10] TS-P310
[2024-09-21 20:23:10] apptainer works
[2024-09-21 20:23:10] Set ATHENA_PROC_NUMBER=4
[2024-09-21 20:23:10] Set ATHENA_CORE_NUMBER=4
[2024-09-21 20:23:10] Starting ATLAS job with PandaID=6340477483
[2024-09-21 20:23:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-09-21 22:01:34]  *** The last 200 lines of the pilot log: ***
[2024-09-21 22:01:34]  domain=
[2024-09-21 22:01:34]  filesize=258743
[2024-09-21 22:01:34]  filetype=log
[2024-09-21 22:01:34]  guid=ddb32295-ae27-48a3-bab6-5bb8d8987551
[2024-09-21 22:01:34]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-09-21 22:01:34]  is_tar=False
[2024-09-21 22:01:34]  lfn=log.41078623._019106.job.log.tgz.1
[2024-09-21 22:01:34]  mtime=0
[2024-09-21 22:01:34]  protocol_id=None
[2024-09-21 22:01:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-09-21 22:01:34]  replicas=None
[2024-09-21 22:01:34]  scope=mc23_13p6TeV
[2024-09-21 22:01:34]  status=None
[2024-09-21 22:01:34]  status_code=0
[2024-09-21 22:01:34]  storage_token=
[2024-09-21 22:01:34]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6340477483/log.41078623._019106.job.log.tgz.1
[2024-09-21 22:01:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/fe/log.41078623._019106.job.log.tgz.1
[2024-09-21 22:01:34]  workdir=None
[2024-09-21 22:01:34] ]
[2024-09-21 22:01:34] 2024-09-21 20:01:14,605 | INFO     | transferring file log.41078623._019106.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6340477483/log.41078623._019106.job.log.tgz.1 to /var/lib/boinc/slots/
[2024-09-21 22:01:34] 2024-09-21 20:01:14,605 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6340477483/log.41078623._019106.job.log.tgz.1 /var/lib/boinc/slots/0/log.41078623._019106.job
[2024-09-21 22:01:34] 2024-09-21 20:01:14,618 | INFO     | adding to output.list: log.41078623._019106.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/fe/log.41078623._019106.job.log.tg
[2024-09-21 22:01:34] 2024-09-21 20:01:14,618 | INFO     | summary of transferred files:
[2024-09-21 22:01:34] 2024-09-21 20:01:14,619 | INFO     |  -- lfn=log.41078623._019106.job.log.tgz.1, status_code=0, status=transferred
[2024-09-21 22:01:34] 2024-09-21 20:01:14,619 | INFO     | stage-out finished correctly
[2024-09-21 22:01:34] 2024-09-21 20:01:14,686 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-09-21 22:01:34] 2024-09-21 20:01:16,022 | INFO     | job 6340477483 has state=finished
[2024-09-21 22:01:34] 2024-09-21 20:01:16,023 | INFO     | preparing for final server update for job 6340477483 in state='finished'
[2024-09-21 22:01:34] 2024-09-21 20:01:16,023 | INFO     | this job has now completed (state=finished)
[2024-09-21 22:01:34] 2024-09-21 20:01:16,023 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-09-21 22:01:34] 2024-09-21 20:01:16,023 | INFO     | log transfer has been attempted: DONE
[2024-09-21 22:01:34] 2024-09-21 20:01:16,023 | INFO     | job 6340477483 has finished - writing final server update
[2024-09-21 22:01:34] 2024-09-21 20:01:16,023 | INFO     | total number of processed events: 400 (read)
[2024-09-21 22:01:34] 2024-09-21 20:01:16,025 | INFO     | executing command: lscpu
[2024-09-21 22:01:34] 2024-09-21 20:01:16,038 | INFO     | found 4 cores (4 cores per socket, 1 sockets)
[2024-09-21 22:01:34] 2024-09-21 20:01:16,039 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-09-21 22:01:34] 2024-09-21 20:01:16,057 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-09-21 22:01:34] 2024-09-21 20:01:19,870 | INFO     | CPU arch script returned: x86-64-v3
[2024-09-21 22:01:34] 2024-09-21 20:01:19,871 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6340477483/memory_monitor_summary.json (trf name=prmon)
[2024-09-21 22:01:34] 2024-09-21 20:01:19,875 | INFO     | extracted standard info from prmon json
[2024-09-21 22:01:34] 2024-09-21 20:01:19,875 | INFO     | extracted standard memory fields from prmon json
[2024-09-21 22:01:34] 2024-09-21 20:01:19,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-09-21 22:01:34] 2024-09-21 20:01:19,876 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-09-21 22:01:34] 2024-09-21 20:01:19,876 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-09-21 22:01:34] 2024-09-21 20:01:19,878 | INFO     | fitting pss+swap vs Time
[2024-09-21 22:01:34] 2024-09-21 20:01:19,878 | INFO     | model: linear, x: [1726943321.0, 1726943382.0, 1726943443.0, 1726943504.0, 1726943565.0, 1726943626.0, 1726943687.0, 1726943748.0, 1726943809.0, 1726943870.0, 1726
[2024-09-21 22:01:34] 2024-09-21 20:01:19,878 | INFO     | sum of square deviations: 218571540.0
[2024-09-21 22:01:34] 2024-09-21 20:01:19,879 | INFO     | sum of deviations: -3469800048.0
[2024-09-21 22:01:34] 2024-09-21 20:01:19,879 | INFO     | mean x: 1726946005.0
[2024-09-21 22:01:34] 2024-09-21 20:01:19,879 | INFO     | mean y: 2438131.337078652
[2024-09-21 22:01:34] 2024-09-21 20:01:19,879 | INFO     | -- intersect: 27417523055.2133
[2024-09-21 22:01:34] 2024-09-21 20:01:19,879 | INFO     | intersect: 27417523055.2133
[2024-09-21 22:01:34] 2024-09-21 20:01:19,879 | INFO     | chi2: 0.0310799246714333
[2024-09-21 22:01:34] 2024-09-21 20:01:19,879 | INFO     | -- intersect: 27417523055.2133
[2024-09-21 22:01:34] 2024-09-21 20:01:19,879 | INFO     | current memory leak: -15.87 B/s (using 89 data points, chi2=0.03)
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | ..............................
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | . Timing measurements:
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | . get job = 0 s
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | . initial setup = 1 s
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | . payload setup = 3 s
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | . stage-in = 0 s
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | . payload execution = 5858 s
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | . stage-out = 0 s
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | . log creation = 0 s
[2024-09-21 22:01:34] 2024-09-21 20:01:19,880 | INFO     | ..............................
[2024-09-21 22:01:34] 2024-09-21 20:01:19,949 | WARNING  | process 559592 is no longer using CPU - aborting
[2024-09-21 22:01:34] 2024-09-21 20:01:19,949 | INFO     | aborting job monitoring since job object (job id=6340477483) has expired
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | 
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | job summary report
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | --------------------------------------------------
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | PanDA job id: 6340477483
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | task id: 41078623
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | errors: (none)
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | status: LOG_TRANSFER = DONE 
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | pilot state: finished 
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | transexitcode: 0
[2024-09-21 22:01:34] 2024-09-21 20:01:20,442 | INFO     | exeerrorcode: 0
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | exeerrordiag: 
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | exitcode: 0
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | exitmsg: OK
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | cpuconsumptiontime: 21800 s
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | nevents: 400
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | neventsw: 0
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | pid: 559592
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | pgrp: 559592
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | corecount: 4
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | event service: False
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | sizes: {0: 2440215, 2: 2440421, 11: 2440449, 5864: 2467093, 5865: 2476108, 5871: 2476222}
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | --------------------------------------------------
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | 
[2024-09-21 22:01:34] 2024-09-21 20:01:20,443 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2024-09-21 22:01:34] 2024-09-21 20:01:20,457 | INFO     | queue jobs had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,457 | INFO     | queue payloads had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,457 | INFO     | queue data_in had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,457 | INFO     | queue data_out had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue completed_jobids has 1 job(s)
[2024-09-21 22:01:34] 2024-09-21 20:01:20,458 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,459 | INFO     | queue messages had 0 job(s) [purged]
[2024-09-21 22:01:34] 2024-09-21 20:01:20,459 | INFO     | job 6340477483 has completed (purged errors)
[2024-09-21 22:01:34] 2024-09-21 20:01:20,459 | INFO     | overall cleanup function is called
[2024-09-21 22:01:34] 2024-09-21 20:01:21,466 | INFO     | --- collectZombieJob: --- 10, [559592]
[2024-09-21 22:01:34] 2024-09-21 20:01:21,466 | INFO     | zombie collector waiting for pid 559592
[2024-09-21 22:01:34] 2024-09-21 20:01:21,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-09-21 22:01:34] 2024-09-21 20:01:21,466 | INFO     | collected zombie processes
[2024-09-21 22:01:34] 2024-09-21 20:01:21,466 | INFO     | will  attempt to kill all subprocesses of pid=559592
[2024-09-21 22:01:34] 2024-09-21 20:01:21,509 | INFO     | process IDs to be killed: [559592] (in reverse order)
[2024-09-21 22:01:34] 2024-09-21 20:01:21,538 | WARNING  | found no corresponding commands to process id(s)
[2024-09-21 22:01:34] 2024-09-21 20:01:21,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-09-21 22:01:34] 2024-09-21 20:01:21,540 | INFO     | did not find any defunct processes belonging to 559592
[2024-09-21 22:01:34] 2024-09-21 20:01:21,541 | INFO     | did not find any defunct processes belonging to 559592
[2024-09-21 22:01:34] 2024-09-21 20:01:21,542 | INFO     | ready for new job
[2024-09-21 22:01:34] 2024-09-21 20:01:21,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-09-21 22:01:34] 2024-09-21 20:01:21,543 | INFO     | **************************************
[2024-09-21 22:01:34] 2024-09-21 20:01:21,543 | INFO     | ***  PanDA Pilot version 3.8.1.66  ***
[2024-09-21 22:01:34] 2024-09-21 20:01:21,543 | INFO     | **************************************
[2024-09-21 22:01:34] 2024-09-21 20:01:21,543 | INFO     | 
[2024-09-21 22:01:34] 2024-09-21 20:01:21,544 | INFO     | architecture information:
[2024-09-21 22:01:34] 2024-09-21 20:01:21,544 | INFO     | executing command: cat /etc/os-release
[2024-09-21 22:01:34] 2024-09-21 20:01:21,554 | INFO     | cat /etc/os-release:
[2024-09-21 22:01:34] NAME="CentOS Linux"
[2024-09-21 22:01:34] VERSION="7 (Core)"
[2024-09-21 22:01:34] ID="centos"
[2024-09-21 22:01:34] ID_LIKE="rhel fedora"
[2024-09-21 22:01:34] VERSION_ID="7"
[2024-09-21 22:01:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-09-21 22:01:34] ANSI_COLOR="0;31"
[2024-09-21 22:01:34] CPE_NAME="cpe:/o:centos:centos:7"
[2024-09-21 22:01:34] HOME_URL="https://www.centos.org/"
[2024-09-21 22:01:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-09-21 22:01:34] 
[2024-09-21 22:01:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-09-21 22:01:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-09-21 22:01:34] REDHAT_SUPPORT_PRODUCT="centos"
[2024-09-21 22:01:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-09-21 22:01:34] 
[2024-09-21 22:01:34] 2024-09-21 20:01:21,554 | INFO     | **************************************
[2024-09-21 22:01:34] 2024-09-21 20:01:22,057 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2024-09-21 22:01:34] 2024-09-21 20:01:22,067 | INFO     | sufficient remaining disk space (65317896192 B)
[2024-09-21 22:01:34] 2024-09-21 20:01:22,067 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-09-21 22:01:34] 2024-09-21 20:01:22,067 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-09-21 22:01:34] 2024-09-21 20:01:22,067 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-09-21 22:01:34] 2024-09-21 20:01:22,068 | INFO     | found 0 job(s) in 20 queues
[2024-09-21 22:01:34] 2024-09-21 20:01:22,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-09-21 22:01:34] 2024-09-21 20:01:22,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-09-21 22:01:34] 2024-09-21 20:01:22,086 | INFO     | all data control threads have been joined
[2024-09-21 22:01:34] 2024-09-21 20:01:22,452 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-09-21 22:01:34] 2024-09-21 20:01:22,452 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-09-21 22:01:34] 2024-09-21 20:01:22,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-09-21 22:01:34] 2024-09-21 20:01:22,452 | INFO     | will abort loop
[2024-09-21 22:01:34] 2024-09-21 20:01:22,580 | INFO     | all job control threads have been joined
[2024-09-21 22:01:34] 2024-09-21 20:01:22,687 | INFO     | all payload control threads have been joined
[2024-09-21 22:01:34] 2024-09-21 20:01:22,692 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-09-21 22:01:34] 2024-09-21 20:01:23,072 | INFO     | [job] retrieve thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:23,089 | INFO     | [data] control thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:23,109 | INFO     | [payload] validate_post thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:23,176 | INFO     | [job] create_data_payload thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:23,234 | INFO     | [payload] validate_pre thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:23,457 | INFO     | [job] job monitor thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:23,582 | INFO     | [job] control thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:23,692 | INFO     | [payload] control thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:23,749 | INFO     | [payload] execute_payloads thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:24,128 | INFO     | [payload] failed_post thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:24,269 | INFO     | [data] copytool_in thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:24,349 | INFO     | [payload] run_realtimelog thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:24,480 | INFO     | [job] validate thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:24,696 | INFO     | [data] copytool_out thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:24,957 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-09-21 22:01:34] 2024-09-21 20:01:25,253 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-09-21 22:01:34] 2024-09-21 20:01:25,963 | INFO     | [job] queue monitor thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:29,257 | INFO     | [data] queue_monitor thread has finished
[2024-09-21 22:01:34] 2024-09-21 20:01:29,601 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140528259581760)>', '<ExcThread(monitor, started 140527487932160)>']
[2024-09-21 22:01:34] 2024-09-21 20:01:30,097 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-09-21 22:01:34] 2024-09-21 20:01:30,097 | INFO     | [monitor] control thread has ended
[2024-09-21 22:01:34] 2024-09-21 20:01:34,626 | INFO     | all workflow threads have been joined
[2024-09-21 22:01:34] 2024-09-21 20:01:34,626 | INFO     | end of generic workflow (traces error code: 0)
[2024-09-21 22:01:34] 2024-09-21 20:01:34,626 | INFO     | traces error code: 0
[2024-09-21 22:01:34] 2024-09-21 20:01:34,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-09-21 22:01:34] 2024-09-21 20:01:34,696 [wrapper] ==== pilot stdout END ====
[2024-09-21 22:01:34] 2024-09-21 20:01:34,698 [wrapper] ==== wrapper stdout RESUME ====
[2024-09-21 22:01:34] 2024-09-21 20:01:34,700 [wrapper] pilotpid: 553215
[2024-09-21 22:01:34] 2024-09-21 20:01:34,702 [wrapper] Pilot exit status: 0
[2024-09-21 22:01:34] 2024-09-21 20:01:34,708 [wrapper] pandaids: 6340477483
[2024-09-21 22:01:34] 2024-09-21 20:01:34,725 [wrapper] cleanup supervisor_pilot  598442 553216
[2024-09-21 22:01:34] 2024-09-21 20:01:34,727 [wrapper] Test setup, not cleaning
[2024-09-21 22:01:34] 2024-09-21 20:01:34,728 [wrapper] ==== wrapper stdout END ====
[2024-09-21 22:01:34] 2024-09-21 20:01:34,730 [wrapper] ==== wrapper stderr END ====
[2024-09-21 22:01:34] 2024-09-21 20:01:34,734 [wrapper] apfmon messages muted
[2024-09-21 22:01:34]  *** Error codes and diagnostics ***
[2024-09-21 22:01:34]     "exeErrorCode": 0,
[2024-09-21 22:01:34]     "exeErrorDiag": "",
[2024-09-21 22:01:34]     "pilotErrorCode": 0,
[2024-09-21 22:01:34]     "pilotErrorDiag": "",
[2024-09-21 22:01:34]  *** Listing of results directory ***
[2024-09-21 22:01:34] insgesamt 594736
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc    482533 21. Sep 01:16 pilot3.tar.gz
[2024-09-21 22:01:34] -rwx------ 1 boinc boinc     33679 21. Sep 01:32 runpilot2-wrapper.sh
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc      5655 21. Sep 01:32 queuedata.json
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc       100 21. Sep 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2024-09-21 22:01:34] -rwxr-xr-x 1 boinc boinc      7986 21. Sep 20:22 run_atlas
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc       105 21. Sep 20:22 job.xml
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc      6722 21. Sep 20:23 init_data.xml
[2024-09-21 22:01:34] -rw-r--r-- 2 boinc boinc 438806631 21. Sep 20:23 EVNT.41078621._000526.pool.root.1
[2024-09-21 22:01:34] drwxrwx--x 2 boinc boinc      4096 21. Sep 20:23 shared
[2024-09-21 22:01:34] -rw-r--r-- 2 boinc boinc    495961 21. Sep 20:23 input.tar.gz
[2024-09-21 22:01:34] -rw-r--r-- 2 boinc boinc     17539 21. Sep 20:23 start_atlas.sh
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc         0 21. Sep 20:23 boinc_lockfile
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc      2561 21. Sep 20:23 pandaJob.out
[2024-09-21 22:01:34] -rw------- 1 boinc boinc       461 21. Sep 20:23 setup.sh.local
[2024-09-21 22:01:34] -rw------- 1 boinc boinc   1008777 21. Sep 20:23 agis_schedconf.cvmfs.json
[2024-09-21 22:01:34] -rw------- 1 boinc boinc   1618603 21. Sep 20:23 agis_ddmendpoints.agis.ALL.json
[2024-09-21 22:01:34] drwx------ 4 boinc boinc      4096 21. Sep 20:23 pilot3
[2024-09-21 22:01:34] -rw------- 1 boinc boinc        95 21. Sep 22:00 pilot_heartbeat.json
[2024-09-21 22:01:34] -rw------- 1 boinc boinc 164723008 21. Sep 22:00 HITS.41078623._019106.pool.root.1
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc       530 21. Sep 22:00 boinc_task_state.xml
[2024-09-21 22:01:34] -rw------- 1 boinc boinc      1021 21. Sep 22:01 memory_monitor_summary.json
[2024-09-21 22:01:34] -rw------- 1 boinc boinc    258743 21. Sep 22:01 log.41078623._019106.job.log.tgz.1
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc      8192 21. Sep 22:01 boinc_mmap_file
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc        27 21. Sep 22:01 wrapper_checkpoint.txt
[2024-09-21 22:01:34] -rw------- 1 boinc boinc      7671 21. Sep 22:01 heartbeat.json
[2024-09-21 22:01:34] -rw------- 1 boinc boinc      4524 21. Sep 22:01 pilotlog.txt
[2024-09-21 22:01:34] -rw------- 1 boinc boinc    553591 21. Sep 22:01 log.41078623._019106.job.log.1
[2024-09-21 22:01:34] -rw------- 1 boinc boinc       357 21. Sep 22:01 output.list
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc       620 21. Sep 22:01 runtime_log
[2024-09-21 22:01:34] -rw------- 1 boinc boinc    829440 21. Sep 22:01 result.tar.gz
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc     11334 21. Sep 22:01 runtime_log.err
[2024-09-21 22:01:34] -rw------- 1 boinc boinc       631 21. Sep 22:01 iqKKDmDI2B6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmWcbKDmqk3qan.diag
[2024-09-21 22:01:34] -rw-r--r-- 1 boinc boinc     20820 21. Sep 22:01 stderr.txt
[2024-09-21 22:01:34] HITS file was successfully produced:
[2024-09-21 22:01:34] -rw------- 1 boinc boinc 164723008 21. Sep 22:00 shared/HITS.pool.root.1
[2024-09-21 22:01:34]  *** Contents of shared directory: ***
[2024-09-21 22:01:34] insgesamt 590716
[2024-09-21 22:01:34] -rw-r--r-- 2 boinc boinc 438806631 21. Sep 20:23 ATLAS.root_0
[2024-09-21 22:01:34] -rw-r--r-- 2 boinc boinc    495961 21. Sep 20:23 input.tar.gz
[2024-09-21 22:01:34] -rw-r--r-- 2 boinc boinc     17539 21. Sep 20:23 start_atlas.sh
[2024-09-21 22:01:34] -rw------- 1 boinc boinc 164723008 21. Sep 22:00 HITS.pool.root.1
[2024-09-21 22:01:34] -rw------- 1 boinc boinc    829440 21. Sep 22:01 result.tar.gz
22:01:36 (549584): run_atlas exited; CPU time 21788.303494
22:01:36 (549584): called boinc_finish(0)

</stderr_txt>
]]>

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