Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
02:41:47 (1662130): wrapper (7.7.26015): starting
02:41:47 (1662130): wrapper: running run_atlas (--nthreads 4)
[2024-09-21 02:41:47] Arguments: --nthreads 4
[2024-09-21 02:41:47] Threads: 4
[2024-09-21 02:41:47] Checking for CVMFS
[2024-09-21 02:41:47] Probing /cvmfs/atlas.cern.ch... OK
[2024-09-21 02:41:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-09-21 02:41:47] Running cvmfs_config stat atlas.cern.ch
[2024-09-21 02:41:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-09-21 02:41:47] 2.11.5.0 1118420 494 69336 137470 3 56 6986369 10240001 1818 130560 0 1660922 99.404 1028030 3293 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2024-09-21 02:41:47] CVMFS is ok
[2024-09-21 02:41:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-09-21 02:41:47] Checking for apptainer binary...
[2024-09-21 02:41:47] Using apptainer found in PATH at /usr/bin/apptainer
[2024-09-21 02:41:47] Running /usr/bin/apptainer --version
[2024-09-21 02:41:47] apptainer version 1.3.2
[2024-09-21 02:41:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-09-21 02:41:47] peachesvl
[2024-09-21 02:41:47] apptainer works
[2024-09-21 02:41:47] Set ATHENA_PROC_NUMBER=4
[2024-09-21 02:41:47] Set ATHENA_CORE_NUMBER=4
[2024-09-21 02:41:47] Starting ATLAS job with PandaID=6340376567
[2024-09-21 02:41:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-09-21 03:58:56]  *** The last 200 lines of the pilot log: ***
[2024-09-21 03:58:56]  lfn=log.41078623._017252.job.log.tgz.1
[2024-09-21 03:58:56]  mtime=0
[2024-09-21 03:58:56]  protocol_id=None
[2024-09-21 03:58:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-09-21 03:58:56]  replicas=None
[2024-09-21 03:58:56]  scope=mc23_13p6TeV
[2024-09-21 03:58:56]  status=None
[2024-09-21 03:58:56]  status_code=0
[2024-09-21 03:58:56]  storage_token=
[2024-09-21 03:58:56]  surl=/var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6340376567/log.41078623._017252.job.log.tgz.1
[2024-09-21 03:58:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/54/log.41078623._017252.job.log.tgz.1
[2024-09-21 03:58:56]  workdir=None
[2024-09-21 03:58:56] ]
[2024-09-21 03:58:56] 2024-09-21 01:58:27,272 | INFO     | transferring file log.41078623._017252.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6340376567/log.41078623._017252.job.log.tgz.1 to /var/li
[2024-09-21 03:58:56] 2024-09-21 01:58:27,272 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6340376567/log.41078623._017252.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2024-09-21 03:58:56] 2024-09-21 01:58:27,289 | INFO     | adding to output.list: log.41078623._017252.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/54/log.41078623._017252.job.log.tg
[2024-09-21 03:58:56] 2024-09-21 01:58:27,289 | INFO     | summary of transferred files:
[2024-09-21 03:58:56] 2024-09-21 01:58:27,289 | INFO     |  -- lfn=log.41078623._017252.job.log.tgz.1, status_code=0, status=transferred
[2024-09-21 03:58:56] 2024-09-21 01:58:27,289 | INFO     | stage-out finished correctly
[2024-09-21 03:58:56] 2024-09-21 01:58:27,421 | INFO     | monitor loop #365: job 0:6340376567 is in state 'finished'
[2024-09-21 03:58:56] 2024-09-21 01:58:27,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-21 03:58:56] 2024-09-21 01:58:29,926 | INFO     | monitor loop #366: job 0:6340376567 is in state 'finished'
[2024-09-21 03:58:56] 2024-09-21 01:58:29,926 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-21 03:58:56] 2024-09-21 01:58:30,609 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-09-21 03:58:56] 2024-09-21 01:58:31,699 | INFO     | job 6340376567 has state=finished
[2024-09-21 03:58:56] 2024-09-21 01:58:31,699 | INFO     | preparing for final server update for job 6340376567 in state='finished'
[2024-09-21 03:58:56] 2024-09-21 01:58:31,699 | INFO     | this job has now completed (state=finished)
[2024-09-21 03:58:56] 2024-09-21 01:58:31,699 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-09-21 03:58:56] 2024-09-21 01:58:31,699 | INFO     | log transfer has been attempted: DONE
[2024-09-21 03:58:56] 2024-09-21 01:58:31,700 | INFO     | job 6340376567 has finished - writing final server update
[2024-09-21 03:58:56] 2024-09-21 01:58:31,700 | INFO     | total number of processed events: 400 (read)
[2024-09-21 03:58:56] 2024-09-21 01:58:31,701 | INFO     | executing command: lscpu
[2024-09-21 03:58:56] 2024-09-21 01:58:31,720 | INFO     | found 24 cores (12 cores per socket, 2 sockets)
[2024-09-21 03:58:56] 2024-09-21 01:58:31,720 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-09-21 03:58:56] 2024-09-21 01:58:31,739 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-09-21 03:58:56] 2024-09-21 01:58:32,430 | INFO     | monitor loop #367: job 0:6340376567 is in state 'finished'
[2024-09-21 03:58:56] 2024-09-21 01:58:32,430 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-21 03:58:56] 2024-09-21 01:58:34,934 | INFO     | monitor loop #368: job 0:6340376567 is in state 'finished'
[2024-09-21 03:58:56] 2024-09-21 01:58:34,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-21 03:58:56] 2024-09-21 01:58:36,448 | INFO     | CPU arch script returned: x86-64-v3
[2024-09-21 03:58:56] 2024-09-21 01:58:36,448 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6340376567/memory_monitor_summary.json (trf name=prmon)
[2024-09-21 03:58:56] 2024-09-21 01:58:36,449 | INFO     | extracted standard info from prmon json
[2024-09-21 03:58:56] 2024-09-21 01:58:36,449 | INFO     | extracted standard memory fields from prmon json
[2024-09-21 03:58:56] 2024-09-21 01:58:36,449 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-09-21 03:58:56] 2024-09-21 01:58:36,449 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-09-21 03:58:56] 2024-09-21 01:58:36,449 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-09-21 03:58:56] 2024-09-21 01:58:36,450 | INFO     | fitting pss+swap vs Time
[2024-09-21 03:58:56] 2024-09-21 01:58:36,450 | INFO     | model: linear, x: [1726879640.0, 1726879701.0, 1726879762.0, 1726879823.0, 1726879884.0, 1726879945.0, 1726880006.0, 1726880067.0, 1726880128.0, 1726880189.0, 1726
[2024-09-21 03:58:56] 2024-09-21 01:58:36,450 | INFO     | sum of square deviations: 97479037.0
[2024-09-21 03:58:56] 2024-09-21 01:58:36,450 | INFO     | sum of deviations: -10554974082.0
[2024-09-21 03:58:56] 2024-09-21 01:58:36,450 | INFO     | mean x: 1726881683.5
[2024-09-21 03:58:56] 2024-09-21 01:58:36,450 | INFO     | mean y: 2444861.617647059
[2024-09-21 03:58:56] 2024-09-21 01:58:36,450 | INFO     | -- intersect: 186988200701.85052
[2024-09-21 03:58:56] 2024-09-21 01:58:36,450 | INFO     | intersect: 186988200701.85052
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | chi2: 0.08039903438463906
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | -- intersect: 186988200701.85052
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | current memory leak: -108.28 B/s (using 68 data points, chi2=0.08)
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | ..............................
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | . Timing measurements:
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | . get job = 0 s
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | . initial setup = 1 s
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | . payload setup = 3 s
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | . stage-in = 0 s
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | . payload execution = 4570 s
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | . stage-out = 0 s
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | . log creation = 0 s
[2024-09-21 03:58:56] 2024-09-21 01:58:36,451 | INFO     | ..............................
[2024-09-21 03:58:56] 2024-09-21 01:58:36,498 | INFO     | 
[2024-09-21 03:58:56] 2024-09-21 01:58:36,498 | INFO     | job summary report
[2024-09-21 03:58:56] 2024-09-21 01:58:36,498 | INFO     | --------------------------------------------------
[2024-09-21 03:58:56] 2024-09-21 01:58:36,498 | INFO     | PanDA job id: 6340376567
[2024-09-21 03:58:56] 2024-09-21 01:58:36,498 | INFO     | task id: 41078623
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | errors: (none)
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | status: LOG_TRANSFER = DONE 
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | pilot state: finished 
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | transexitcode: 0
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | exeerrorcode: 0
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | exeerrordiag: 
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | exitcode: 0
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | exitmsg: OK
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | cpuconsumptiontime: 17010 s
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | nevents: 400
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | neventsw: 0
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | pid: 1672475
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | pgrp: 1672475
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | corecount: 4
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | event service: False
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | sizes: {0: 2440230, 3: 2440436, 11: 2440464, 4578: 2466571, 4580: 2475559, 4583: 2475615, 4589: 2475913}
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | --------------------------------------------------
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | 
[2024-09-21 03:58:56] 2024-09-21 01:58:36,499 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/2
[2024-09-21 03:58:56] 2024-09-21 01:58:36,516 | INFO     | queue jobs had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,516 | INFO     | queue payloads had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,516 | INFO     | queue data_in had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,516 | INFO     | queue data_out had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue completed_jobids has 1 job(s)
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | queue messages had 0 job(s) [purged]
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | job 6340376567 has completed (purged errors)
[2024-09-21 03:58:56] 2024-09-21 01:58:36,517 | INFO     | overall cleanup function is called
[2024-09-21 03:58:56] 2024-09-21 01:58:37,525 | INFO     | --- collectZombieJob: --- 10, [1672475]
[2024-09-21 03:58:56] 2024-09-21 01:58:37,525 | INFO     | zombie collector waiting for pid 1672475
[2024-09-21 03:58:56] 2024-09-21 01:58:37,525 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-09-21 03:58:56] 2024-09-21 01:58:37,525 | INFO     | collected zombie processes
[2024-09-21 03:58:56] 2024-09-21 01:58:37,525 | INFO     | will  attempt to kill all subprocesses of pid=1672475
[2024-09-21 03:58:56] 2024-09-21 01:58:37,585 | INFO     | process IDs to be killed: [1672475] (in reverse order)
[2024-09-21 03:58:56] 2024-09-21 01:58:37,630 | WARNING  | found no corresponding commands to process id(s)
[2024-09-21 03:58:56] 2024-09-21 01:58:37,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-09-21 03:58:56] 2024-09-21 01:58:37,633 | INFO     | did not find any defunct processes belonging to 1672475
[2024-09-21 03:58:56] 2024-09-21 01:58:37,635 | INFO     | did not find any defunct processes belonging to 1672475
[2024-09-21 03:58:56] 2024-09-21 01:58:37,635 | INFO     | ready for new job
[2024-09-21 03:58:56] 2024-09-21 01:58:37,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-09-21 03:58:56] 2024-09-21 01:58:37,636 | INFO     | **************************************
[2024-09-21 03:58:56] 2024-09-21 01:58:37,637 | INFO     | ***  PanDA Pilot version 3.8.1.66  ***
[2024-09-21 03:58:56] 2024-09-21 01:58:37,637 | INFO     | **************************************
[2024-09-21 03:58:56] 2024-09-21 01:58:37,637 | INFO     | 
[2024-09-21 03:58:56] 2024-09-21 01:58:37,637 | INFO     | pilot is running in a VM
[2024-09-21 03:58:56] 2024-09-21 01:58:37,637 | INFO     | architecture information:
[2024-09-21 03:58:56] 2024-09-21 01:58:37,637 | INFO     | executing command: cat /etc/os-release
[2024-09-21 03:58:56] 2024-09-21 01:58:37,650 | INFO     | cat /etc/os-release:
[2024-09-21 03:58:56] NAME="CentOS Linux"
[2024-09-21 03:58:56] VERSION="7 (Core)"
[2024-09-21 03:58:56] ID="centos"
[2024-09-21 03:58:56] ID_LIKE="rhel fedora"
[2024-09-21 03:58:56] VERSION_ID="7"
[2024-09-21 03:58:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-09-21 03:58:56] ANSI_COLOR="0;31"
[2024-09-21 03:58:56] CPE_NAME="cpe:/o:centos:centos:7"
[2024-09-21 03:58:56] HOME_URL="https://www.centos.org/"
[2024-09-21 03:58:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-09-21 03:58:56] 
[2024-09-21 03:58:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-09-21 03:58:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-09-21 03:58:56] REDHAT_SUPPORT_PRODUCT="centos"
[2024-09-21 03:58:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-09-21 03:58:56] 
[2024-09-21 03:58:56] 2024-09-21 01:58:37,650 | INFO     | **************************************
[2024-09-21 03:58:56] 2024-09-21 01:58:38,153 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/2
[2024-09-21 03:58:56] 2024-09-21 01:58:38,166 | INFO     | sufficient remaining disk space (25359810560 B)
[2024-09-21 03:58:56] 2024-09-21 01:58:38,167 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-09-21 03:58:56] 2024-09-21 01:58:38,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-09-21 03:58:56] 2024-09-21 01:58:38,167 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-09-21 03:58:56] 2024-09-21 01:58:38,167 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-09-21 03:58:56] 2024-09-21 01:58:38,167 | INFO     | found 0 job(s) in 20 queues
[2024-09-21 03:58:56] 2024-09-21 01:58:38,168 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-09-21 03:58:56] 2024-09-21 01:58:38,168 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-09-21 03:58:56] 2024-09-21 01:58:38,168 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-09-21 03:58:56] 2024-09-21 01:58:38,444 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-09-21 03:58:56] 2024-09-21 01:58:38,444 | INFO     | aborting loop
[2024-09-21 03:58:56] 2024-09-21 01:58:38,808 | INFO     | all job control threads have been joined
[2024-09-21 03:58:56] 2024-09-21 01:58:38,873 | INFO     | all data control threads have been joined
[2024-09-21 03:58:56] 2024-09-21 01:58:39,172 | INFO     | [job] retrieve thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:39,173 | INFO     | [job] queue monitor thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:39,252 | INFO     | [payload] validate_post thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:39,319 | INFO     | all payload control threads have been joined
[2024-09-21 03:58:56] 2024-09-21 01:58:39,372 | INFO     | [payload] failed_post thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:39,450 | INFO     | [job] job monitor thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:39,814 | INFO     | [job] control thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:39,878 | INFO     | [data] control thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:39,900 | INFO     | [payload] execute_payloads thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:39,996 | INFO     | [data] copytool_in thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:40,004 | INFO     | [job] validate thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:40,173 | INFO     | [data] copytool_out thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:40,294 | INFO     | [job] create_data_payload thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:40,307 | INFO     | [payload] validate_pre thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:40,324 | INFO     | [payload] control thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:41,157 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-09-21 03:58:56] 2024-09-21 01:58:45,164 | INFO     | [data] queue_monitor thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:48,990 | INFO     | job.realtimelogging is not enabled
[2024-09-21 03:58:56] 2024-09-21 01:58:49,996 | INFO     | [payload] run_realtimelog thread has finished
[2024-09-21 03:58:56] 2024-09-21 01:58:51,243 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139375905236800)>', '<ExcThread(monitor, started 139375367161600)>']
[2024-09-21 03:58:56] 2024-09-21 01:58:52,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-09-21 03:58:56] 2024-09-21 01:58:52,242 | INFO     | [monitor] control thread has ended
[2024-09-21 03:58:56] 2024-09-21 01:58:56,269 | INFO     | all workflow threads have been joined
[2024-09-21 03:58:56] 2024-09-21 01:58:56,269 | INFO     | end of generic workflow (traces error code: 0)
[2024-09-21 03:58:56] 2024-09-21 01:58:56,269 | INFO     | traces error code: 0
[2024-09-21 03:58:56] 2024-09-21 01:58:56,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-09-21 03:58:56] 2024-09-21 01:58:56,333 [wrapper] ==== pilot stdout END ====
[2024-09-21 03:58:56] 2024-09-21 01:58:56,336 [wrapper] ==== wrapper stdout RESUME ====
[2024-09-21 03:58:56] 2024-09-21 01:58:56,338 [wrapper] pilotpid: 1665890
[2024-09-21 03:58:56] 2024-09-21 01:58:56,340 [wrapper] Pilot exit status: 0
[2024-09-21 03:58:56] 2024-09-21 01:58:56,349 [wrapper] pandaids: 6340376567
[2024-09-21 03:58:56] 2024-09-21 01:58:56,384 [wrapper] cleanup supervisor_pilot 1742117 1665891
[2024-09-21 03:58:56] 2024-09-21 01:58:56,387 [wrapper] Test setup, not cleaning
[2024-09-21 03:58:56] 2024-09-21 01:58:56,389 [wrapper] ==== wrapper stdout END ====
[2024-09-21 03:58:56] 2024-09-21 01:58:56,391 [wrapper] ==== wrapper stderr END ====
[2024-09-21 03:58:56] 2024-09-21 01:58:56,396 [wrapper] apfmon messages muted
[2024-09-21 03:58:56]  *** Error codes and diagnostics ***
[2024-09-21 03:58:56]     "exeErrorCode": 0,
[2024-09-21 03:58:56]     "exeErrorDiag": "",
[2024-09-21 03:58:56]     "pilotErrorCode": 0,
[2024-09-21 03:58:56]     "pilotErrorDiag": "",
[2024-09-21 03:58:56]  *** Listing of results directory ***
[2024-09-21 03:58:56] insgesamt 593720
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc    482533 Sep 20 23:15 pilot3.tar.gz
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc      5655 Sep 20 23:21 queuedata.json
[2024-09-21 03:58:56] -rwx------ 1 yeti boinc     33679 Sep 20 23:23 runpilot2-wrapper.sh
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc       100 Sep 21 02:41 wrapper_26015_x86_64-pc-linux-gnu
[2024-09-21 03:58:56] -rwxr-xr-x 1 yeti boinc      7986 Sep 21 02:41 run_atlas
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc       105 Sep 21 02:41 job.xml
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc      6688 Sep 21 02:41 init_data.xml
[2024-09-21 03:58:56] -rw-r--r-- 2 yeti boinc 438817767 Sep 21 02:41 EVNT.41078621._000691.pool.root.1
[2024-09-21 03:58:56] -rw-r--r-- 2 yeti boinc     17539 Sep 21 02:41 start_atlas.sh
[2024-09-21 03:58:56] drwxrwx--x 2 yeti boinc      4096 Sep 21 02:41 shared
[2024-09-21 03:58:56] -rw-r--r-- 2 yeti boinc    495968 Sep 21 02:41 input.tar.gz
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc         0 Sep 21 02:41 boinc_lockfile
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc      2562 Sep 21 02:41 pandaJob.out
[2024-09-21 03:58:56] -rw------- 1 yeti boinc       462 Sep 21 02:41 setup.sh.local
[2024-09-21 03:58:56] -rw------- 1 yeti boinc   1008785 Sep 21 02:41 agis_schedconf.cvmfs.json
[2024-09-21 03:58:56] -rw------- 1 yeti boinc   1618603 Sep 21 02:41 agis_ddmendpoints.agis.ALL.json
[2024-09-21 03:58:56] drwx------ 4 yeti boinc      4096 Sep 21 02:41 pilot3
[2024-09-21 03:58:56] -rw------- 1 yeti boinc        95 Sep 21 03:58 pilot_heartbeat.json
[2024-09-21 03:58:56] -rw------- 1 yeti boinc 163864132 Sep 21 03:58 HITS.41078623._017252.pool.root.1
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc       530 Sep 21 03:58 boinc_task_state.xml
[2024-09-21 03:58:56] -rw------- 1 yeti boinc      1023 Sep 21 03:58 memory_monitor_summary.json
[2024-09-21 03:58:56] -rw------- 1 yeti boinc    251697 Sep 21 03:58 log.41078623._017252.job.log.tgz.1
[2024-09-21 03:58:56] -rw------- 1 yeti boinc      7656 Sep 21 03:58 heartbeat.json
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc      8192 Sep 21 03:58 boinc_mmap_file
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc        27 Sep 21 03:58 wrapper_checkpoint.txt
[2024-09-21 03:58:56] -rw------- 1 yeti boinc      4486 Sep 21 03:58 pilotlog.txt
[2024-09-21 03:58:56] -rw------- 1 yeti boinc    463723 Sep 21 03:58 log.41078623._017252.job.log.1
[2024-09-21 03:58:56] -rw------- 1 yeti boinc       357 Sep 21 03:58 output.list
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc       620 Sep 21 03:58 runtime_log
[2024-09-21 03:58:56] -rw------- 1 yeti boinc    737280 Sep 21 03:58 result.tar.gz
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc     11605 Sep 21 03:58 runtime_log.err
[2024-09-21 03:58:56] -rw------- 1 yeti boinc       627 Sep 21 03:58 2CRODmAH0B6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmgObKDmCWkATm.diag
[2024-09-21 03:58:56] -rw-r--r-- 1 yeti boinc     21386 Sep 21 03:58 stderr.txt
[2024-09-21 03:58:56] HITS file was successfully produced:
[2024-09-21 03:58:56] -rw------- 1 yeti boinc 163864132 Sep 21 03:58 shared/HITS.pool.root.1
[2024-09-21 03:58:56]  *** Contents of shared directory: ***
[2024-09-21 03:58:56] insgesamt 589796
[2024-09-21 03:58:56] -rw-r--r-- 2 yeti boinc 438817767 Sep 21 02:41 ATLAS.root_0
[2024-09-21 03:58:56] -rw-r--r-- 2 yeti boinc     17539 Sep 21 02:41 start_atlas.sh
[2024-09-21 03:58:56] -rw-r--r-- 2 yeti boinc    495968 Sep 21 02:41 input.tar.gz
[2024-09-21 03:58:56] -rw------- 1 yeti boinc 163864132 Sep 21 03:58 HITS.pool.root.1
[2024-09-21 03:58:56] -rw------- 1 yeti boinc    737280 Sep 21 03:58 result.tar.gz
03:58:58 (1662130): run_atlas exited; CPU time 16956.616236
03:58:58 (1662130): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN