Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
11:36:58 (875758): wrapper (7.7.26015): starting
11:36:58 (875758): wrapper: running run_atlas (--nthreads 4)
[2024-09-21 11:36:58] Arguments: --nthreads 4
[2024-09-21 11:36:58] Threads: 4
[2024-09-21 11:36:58] Checking for CVMFS
[2024-09-21 11:36:58] Probing /cvmfs/atlas.cern.ch... OK
[2024-09-21 11:36:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-09-21 11:36:58] Running cvmfs_config stat atlas.cern.ch
[2024-09-21 11:36:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-09-21 11:36:59] 2.11.4.0 80687 946 67752 137483 2 187 5929132 6144001 2745 130560 0 3055798 99.9964 244127 7229 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.202:3128 1
[2024-09-21 11:36:59] CVMFS is ok
[2024-09-21 11:36:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-09-21 11:36:59] Checking for apptainer binary...
[2024-09-21 11:36:59] Using apptainer found in PATH at /usr/bin/apptainer
[2024-09-21 11:36:59] Running /usr/bin/apptainer --version
[2024-09-21 11:36:59] apptainer version 1.3.3
[2024-09-21 11:36:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-09-21 11:36:59] Ryzen5
[2024-09-21 11:36:59] apptainer works
[2024-09-21 11:36:59] Set ATHENA_PROC_NUMBER=4
[2024-09-21 11:36:59] Set ATHENA_CORE_NUMBER=4
[2024-09-21 11:36:59] Starting ATLAS job with PandaID=6340317853
[2024-09-21 11:36:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-09-21 13:01:03]  *** The last 200 lines of the pilot log: ***
[2024-09-21 13:01:03]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-09-21 13:01:03]  is_tar=False
[2024-09-21 13:01:03]  lfn=log.41078623._016354.job.log.tgz.1
[2024-09-21 13:01:03]  mtime=0
[2024-09-21 13:01:03]  protocol_id=None
[2024-09-21 13:01:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-09-21 13:01:03]  replicas=None
[2024-09-21 13:01:03]  scope=mc23_13p6TeV
[2024-09-21 13:01:03]  status=None
[2024-09-21 13:01:03]  status_code=0
[2024-09-21 13:01:03]  storage_token=
[2024-09-21 13:01:03]  surl=/var/lib/boinc2/slots/0/PanDA_Pilot-6340317853/log.41078623._016354.job.log.tgz.1
[2024-09-21 13:01:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/e0/log.41078623._016354.job.log.tgz.1
[2024-09-21 13:01:03]  workdir=None
[2024-09-21 13:01:03] ]
[2024-09-21 13:01:03] 2024-09-21 11:00:35,502 | INFO     | transferring file log.41078623._016354.job.log.tgz.1 from /var/lib/boinc2/slots/0/PanDA_Pilot-6340317853/log.41078623._016354.job.log.tgz.1 to /var/lib/boinc2/slot
[2024-09-21 13:01:03] 2024-09-21 11:00:35,502 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc2/slots/0/PanDA_Pilot-6340317853/log.41078623._016354.job.log.tgz.1 /var/lib/boinc2/slots/0/log.41078623._016354.j
[2024-09-21 13:01:03] 2024-09-21 11:00:35,515 | INFO     | adding to output.list: log.41078623._016354.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/e0/log.41078623._016354.job.log.tg
[2024-09-21 13:01:03] 2024-09-21 11:00:35,516 | INFO     | summary of transferred files:
[2024-09-21 13:01:03] 2024-09-21 11:00:35,516 | INFO     |  -- lfn=log.41078623._016354.job.log.tgz.1, status_code=0, status=transferred
[2024-09-21 13:01:03] 2024-09-21 11:00:35,516 | INFO     | stage-out finished correctly
[2024-09-21 13:01:03] 2024-09-21 11:00:37,294 | INFO     | monitor loop #397: job 0:6340317853 is in state 'finished'
[2024-09-21 13:01:03] 2024-09-21 11:00:37,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-21 13:01:03] 2024-09-21 11:00:38,328 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-09-21 13:01:03] 2024-09-21 11:00:39,797 | INFO     | monitor loop #398: job 0:6340317853 is in state 'finished'
[2024-09-21 13:01:03] 2024-09-21 11:00:39,797 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-21 13:01:03] 2024-09-21 11:00:40,320 | INFO     | job 6340317853 has state=finished
[2024-09-21 13:01:03] 2024-09-21 11:00:40,320 | INFO     | preparing for final server update for job 6340317853 in state='finished'
[2024-09-21 13:01:03] 2024-09-21 11:00:40,320 | INFO     | this job has now completed (state=finished)
[2024-09-21 13:01:03] 2024-09-21 11:00:40,320 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-09-21 13:01:03] 2024-09-21 11:00:40,320 | INFO     | log transfer has been attempted: DONE
[2024-09-21 13:01:03] 2024-09-21 11:00:40,321 | INFO     | job 6340317853 has finished - writing final server update
[2024-09-21 13:01:03] 2024-09-21 11:00:40,321 | INFO     | total number of processed events: 400 (read)
[2024-09-21 13:01:03] 2024-09-21 11:00:40,322 | INFO     | executing command: lscpu
[2024-09-21 13:01:03] 2024-09-21 11:00:40,340 | INFO     | found 8 cores (8 cores per socket, 1 sockets)
[2024-09-21 13:01:03] 2024-09-21 11:00:40,340 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-09-21 13:01:03] 2024-09-21 11:00:40,360 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-09-21 13:01:03] 2024-09-21 11:00:42,298 | INFO     | monitor loop #399: job 0:6340317853 is in state 'finished'
[2024-09-21 13:01:03] 2024-09-21 11:00:42,299 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-21 13:01:03] 2024-09-21 11:00:44,801 | INFO     | monitor loop #400: job 0:6340317853 is in state 'finished'
[2024-09-21 13:01:03] 2024-09-21 11:00:44,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-09-21 13:01:03] 2024-09-21 11:00:44,817 | INFO     | CPU arch script returned: x86-64-v3
[2024-09-21 13:01:03] 2024-09-21 11:00:44,817 | INFO     | using path: /var/lib/boinc2/slots/0/PanDA_Pilot-6340317853/memory_monitor_summary.json (trf name=prmon)
[2024-09-21 13:01:03] 2024-09-21 11:00:44,818 | INFO     | extracted standard info from prmon json
[2024-09-21 13:01:03] 2024-09-21 11:00:44,818 | INFO     | extracted standard memory fields from prmon json
[2024-09-21 13:01:03] 2024-09-21 11:00:44,818 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-09-21 13:01:03] 2024-09-21 11:00:44,818 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-09-21 13:01:03] 2024-09-21 11:00:44,818 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-09-21 13:01:03] 2024-09-21 11:00:44,819 | INFO     | fitting pss+swap vs Time
[2024-09-21 13:01:03] 2024-09-21 11:00:44,819 | INFO     | model: linear, x: [1726911750.0, 1726911811.0, 1726911872.0, 1726911933.0, 1726911994.0, 1726912055.0, 1726912116.0, 1726912177.0, 1726912238.0, 1726912299.0, 1726
[2024-09-21 13:01:03] 2024-09-21 11:00:44,820 | INFO     | sum of square deviations: 130793150.0
[2024-09-21 13:01:03] 2024-09-21 11:00:44,820 | INFO     | sum of deviations: -5097670997.000001
[2024-09-21 13:01:03] 2024-09-21 11:00:44,820 | INFO     | mean x: 1726914007.0
[2024-09-21 13:01:03] 2024-09-21 11:00:44,820 | INFO     | mean y: 2404782.6266666665
[2024-09-21 13:01:03] 2024-09-21 11:00:44,820 | INFO     | -- intersect: 67308983512.452774
[2024-09-21 13:01:03] 2024-09-21 11:00:44,820 | INFO     | intersect: 67308983512.452774
[2024-09-21 13:01:03] 2024-09-21 11:00:44,820 | INFO     | chi2: 0.023932310812960808
[2024-09-21 13:01:03] 2024-09-21 11:00:44,820 | INFO     | -- intersect: 67308983512.452774
[2024-09-21 13:01:03] 2024-09-21 11:00:44,820 | INFO     | current memory leak: -38.98 B/s (using 75 data points, chi2=0.02)
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | ..............................
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | . Timing measurements:
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | . get job = 0 s
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | . initial setup = 1 s
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | . payload setup = 3 s
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | . stage-in = 0 s
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | . payload execution = 4988 s
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | . stage-out = 0 s
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | . log creation = 0 s
[2024-09-21 13:01:03] 2024-09-21 11:00:44,821 | INFO     | ..............................
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | 
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | job summary report
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | --------------------------------------------------
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | PanDA job id: 6340317853
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | task id: 41078623
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | errors: (none)
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | status: LOG_TRANSFER = DONE 
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | pilot state: finished 
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | transexitcode: 0
[2024-09-21 13:01:03] 2024-09-21 11:00:44,890 | INFO     | exeerrorcode: 0
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | exeerrordiag: 
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | exitcode: 0
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | exitmsg: OK
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | cpuconsumptiontime: 18516 s
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | nevents: 400
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | neventsw: 0
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | pid: 885966
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | pgrp: 885966
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | corecount: 4
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | event service: False
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | sizes: {0: 2440217, 2: 2440423, 11: 2440451, 4995: 2466803, 4997: 2475765, 5000: 2475821, 5006: 2476119}
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | --------------------------------------------------
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | 
[2024-09-21 13:01:03] 2024-09-21 11:00:44,891 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/0
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue jobs had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue payloads had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue data_in had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue data_out had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,907 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,907 | INFO     | queue completed_jobids has 1 job(s)
[2024-09-21 13:01:03] 2024-09-21 11:00:44,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,907 | INFO     | queue messages had 0 job(s) [purged]
[2024-09-21 13:01:03] 2024-09-21 11:00:44,907 | INFO     | job 6340317853 has completed (purged errors)
[2024-09-21 13:01:03] 2024-09-21 11:00:44,907 | INFO     | overall cleanup function is called
[2024-09-21 13:01:03] 2024-09-21 11:00:45,912 | INFO     | --- collectZombieJob: --- 10, [885966]
[2024-09-21 13:01:03] 2024-09-21 11:00:45,912 | INFO     | zombie collector waiting for pid 885966
[2024-09-21 13:01:03] 2024-09-21 11:00:45,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-09-21 13:01:03] 2024-09-21 11:00:45,912 | INFO     | collected zombie processes
[2024-09-21 13:01:03] 2024-09-21 11:00:45,912 | INFO     | will  attempt to kill all subprocesses of pid=885966
[2024-09-21 13:01:03] 2024-09-21 11:00:45,968 | INFO     | process IDs to be killed: [885966] (in reverse order)
[2024-09-21 13:01:03] 2024-09-21 11:00:46,004 | WARNING  | found no corresponding commands to process id(s)
[2024-09-21 13:01:03] 2024-09-21 11:00:46,005 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-09-21 13:01:03] 2024-09-21 11:00:46,007 | INFO     | did not find any defunct processes belonging to 885966
[2024-09-21 13:01:03] 2024-09-21 11:00:46,009 | INFO     | did not find any defunct processes belonging to 885966
[2024-09-21 13:01:03] 2024-09-21 11:00:46,009 | INFO     | ready for new job
[2024-09-21 13:01:03] 2024-09-21 11:00:46,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-09-21 13:01:03] 2024-09-21 11:00:46,010 | INFO     | **************************************
[2024-09-21 13:01:03] 2024-09-21 11:00:46,010 | INFO     | ***  PanDA Pilot version 3.8.1.66  ***
[2024-09-21 13:01:03] 2024-09-21 11:00:46,010 | INFO     | **************************************
[2024-09-21 13:01:03] 2024-09-21 11:00:46,010 | INFO     | 
[2024-09-21 13:01:03] 2024-09-21 11:00:46,011 | INFO     | architecture information:
[2024-09-21 13:01:03] 2024-09-21 11:00:46,011 | INFO     | executing command: cat /etc/os-release
[2024-09-21 13:01:03] 2024-09-21 11:00:46,022 | INFO     | cat /etc/os-release:
[2024-09-21 13:01:03] NAME="CentOS Linux"
[2024-09-21 13:01:03] VERSION="7 (Core)"
[2024-09-21 13:01:03] ID="centos"
[2024-09-21 13:01:03] ID_LIKE="rhel fedora"
[2024-09-21 13:01:03] VERSION_ID="7"
[2024-09-21 13:01:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-09-21 13:01:03] ANSI_COLOR="0;31"
[2024-09-21 13:01:03] CPE_NAME="cpe:/o:centos:centos:7"
[2024-09-21 13:01:03] HOME_URL="https://www.centos.org/"
[2024-09-21 13:01:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-09-21 13:01:03] 
[2024-09-21 13:01:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-09-21 13:01:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-09-21 13:01:03] REDHAT_SUPPORT_PRODUCT="centos"
[2024-09-21 13:01:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-09-21 13:01:03] 
[2024-09-21 13:01:03] 2024-09-21 11:00:46,022 | INFO     | **************************************
[2024-09-21 13:01:03] 2024-09-21 11:00:46,525 | INFO     | executing command: df -mP /var/lib/boinc2/slots/0
[2024-09-21 13:01:03] 2024-09-21 11:00:46,538 | INFO     | sufficient remaining disk space (403899940864 B)
[2024-09-21 13:01:03] 2024-09-21 11:00:46,538 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-09-21 13:01:03] 2024-09-21 11:00:46,538 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-09-21 13:01:03] 2024-09-21 11:00:46,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-09-21 13:01:03] 2024-09-21 11:00:46,538 | INFO     | aborting loop
[2024-09-21 13:01:03] 2024-09-21 11:00:46,538 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-09-21 13:01:03] 2024-09-21 11:00:46,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-09-21 13:01:03] 2024-09-21 11:00:46,802 | INFO     | found 0 job(s) in 20 queues
[2024-09-21 13:01:03] 2024-09-21 11:00:46,802 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-09-21 13:01:03] 2024-09-21 11:00:46,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-09-21 13:01:03] 2024-09-21 11:00:46,804 | INFO     | all data control threads have been joined
[2024-09-21 13:01:03] 2024-09-21 11:00:46,926 | INFO     | all payload control threads have been joined
[2024-09-21 13:01:03] 2024-09-21 11:00:47,542 | INFO     | [job] queue monitor thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:47,543 | INFO     | [job] retrieve thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:47,543 | INFO     | [job] job monitor thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:47,595 | INFO     | [payload] validate_post thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:47,809 | INFO     | [data] control thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:47,828 | INFO     | [payload] failed_post thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:47,928 | INFO     | [payload] control thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:48,225 | INFO     | [payload] execute_payloads thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:48,228 | INFO     | all job control threads have been joined
[2024-09-21 13:01:03] 2024-09-21 11:00:48,327 | INFO     | [data] copytool_in thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:48,527 | INFO     | [job] validate thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:48,544 | INFO     | [data] copytool_out thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:48,723 | INFO     | [job] create_data_payload thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:48,879 | INFO     | [payload] validate_pre thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:48,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-09-21 13:01:03] 2024-09-21 11:00:49,233 | INFO     | [job] control thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:52,908 | INFO     | [data] queue_monitor thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:56,818 | INFO     | job.realtimelogging is not enabled
[2024-09-21 13:01:03] 2024-09-21 11:00:57,822 | INFO     | [payload] run_realtimelog thread has finished
[2024-09-21 13:01:03] 2024-09-21 11:00:58,687 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139646960277312)>', '<ExcThread(monitor, started 139646457587456)>']
[2024-09-21 13:01:03] 2024-09-21 11:00:58,847 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-09-21 13:01:03] 2024-09-21 11:00:58,847 | INFO     | [monitor] control thread has ended
[2024-09-21 13:01:03] 2024-09-21 11:01:03,703 | INFO     | all workflow threads have been joined
[2024-09-21 13:01:03] 2024-09-21 11:01:03,703 | INFO     | end of generic workflow (traces error code: 0)
[2024-09-21 13:01:03] 2024-09-21 11:01:03,703 | INFO     | traces error code: 0
[2024-09-21 13:01:03] 2024-09-21 11:01:03,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-09-21 13:01:03] 2024-09-21 11:01:03,771 [wrapper] ==== pilot stdout END ====
[2024-09-21 13:01:03] 2024-09-21 11:01:03,772 [wrapper] ==== wrapper stdout RESUME ====
[2024-09-21 13:01:03] 2024-09-21 11:01:03,774 [wrapper] pilotpid: 879456
[2024-09-21 13:01:03] 2024-09-21 11:01:03,775 [wrapper] Pilot exit status: 0
[2024-09-21 13:01:03] 2024-09-21 11:01:03,781 [wrapper] pandaids: 6340317853
[2024-09-21 13:01:03] 2024-09-21 11:01:03,804 [wrapper] cleanup supervisor_pilot  970366 879457
[2024-09-21 13:01:03] 2024-09-21 11:01:03,806 [wrapper] Test setup, not cleaning
[2024-09-21 13:01:03] 2024-09-21 11:01:03,808 [wrapper] ==== wrapper stdout END ====
[2024-09-21 13:01:03] 2024-09-21 11:01:03,809 [wrapper] ==== wrapper stderr END ====
[2024-09-21 13:01:03] 2024-09-21 11:01:03,812 [wrapper] apfmon messages muted
[2024-09-21 13:01:03]  *** Error codes and diagnostics ***
[2024-09-21 13:01:03]     "exeErrorCode": 0,
[2024-09-21 13:01:03]     "exeErrorDiag": "",
[2024-09-21 13:01:03]     "pilotErrorCode": 0,
[2024-09-21 13:01:03]     "pilotErrorDiag": "",
[2024-09-21 13:01:03]  *** Listing of results directory ***
[2024-09-21 13:01:03] insgesamt 596124
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc    482533 20. Sep 22:26 pilot3.tar.gz
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc      5655 20. Sep 22:36 queuedata.json
[2024-09-21 13:01:03] -rwx------ 1 boinc boinc     33679 20. Sep 22:39 runpilot2-wrapper.sh
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc       100 21. Sep 11:36 wrapper_26015_x86_64-pc-linux-gnu
[2024-09-21 13:01:03] -rwxr-xr-x 1 boinc boinc      7986 21. Sep 11:36 run_atlas
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc       105 21. Sep 11:36 job.xml
[2024-09-21 13:01:03] -rw-r--r-- 2 boinc boinc     17539 21. Sep 11:36 start_atlas.sh
[2024-09-21 13:01:03] drwxrwx--x 2 boinc boinc      4096 21. Sep 11:36 shared
[2024-09-21 13:01:03] -rw-r--r-- 2 boinc boinc    495964 21. Sep 11:36 input.tar.gz
[2024-09-21 13:01:03] -rw-r--r-- 2 boinc boinc 440050890 21. Sep 11:36 EVNT.41078621._000646.pool.root.1
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc         0 21. Sep 11:36 boinc_lockfile
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc      2562 21. Sep 11:36 pandaJob.out
[2024-09-21 13:01:03] -rw------- 1 boinc boinc       461 21. Sep 11:36 setup.sh.local
[2024-09-21 13:01:03] -rw------- 1 boinc boinc   1008801 21. Sep 11:37 agis_schedconf.cvmfs.json
[2024-09-21 13:01:03] -rw------- 1 boinc boinc   1618603 21. Sep 11:37 agis_ddmendpoints.agis.ALL.json
[2024-09-21 13:01:03] drwx------ 4 boinc boinc      4096 21. Sep 11:37 pilot3
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc      6941 21. Sep 12:02 init_data.xml
[2024-09-21 13:01:03] -rw------- 1 boinc boinc 165092252 21. Sep 13:00 HITS.41078623._016354.pool.root.1
[2024-09-21 13:01:03] -rw------- 1 boinc boinc        95 21. Sep 13:00 pilot_heartbeat.json
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc       530 21. Sep 13:00 boinc_task_state.xml
[2024-09-21 13:01:03] -rw------- 1 boinc boinc      1022 21. Sep 13:00 memory_monitor_summary.json
[2024-09-21 13:01:03] -rw------- 1 boinc boinc    237314 21. Sep 13:00 log.41078623._016354.job.log.tgz.1
[2024-09-21 13:01:03] -rw------- 1 boinc boinc      7643 21. Sep 13:00 heartbeat.json
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc      8192 21. Sep 13:00 boinc_mmap_file
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc        27 21. Sep 13:00 wrapper_checkpoint.txt
[2024-09-21 13:01:03] -rw------- 1 boinc boinc      4289 21. Sep 13:01 pilotlog.txt
[2024-09-21 13:01:03] -rw------- 1 boinc boinc    479590 21. Sep 13:01 log.41078623._016354.job.log.1
[2024-09-21 13:01:03] -rw------- 1 boinc boinc       357 21. Sep 13:01 output.list
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc       620 21. Sep 13:01 runtime_log
[2024-09-21 13:01:03] -rw------- 1 boinc boinc    737280 21. Sep 13:01 result.tar.gz
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc     11342 21. Sep 13:01 runtime_log.err
[2024-09-21 13:01:03] -rw------- 1 boinc boinc       630 21. Sep 13:01 7q7MDm7azB6n7OlckoGmwREmGgkVDo1bjSoqOlfODmZ9lKDmCNSKkm.diag
[2024-09-21 13:01:03] -rw-r--r-- 1 boinc boinc     21192 21. Sep 13:01 stderr.txt
[2024-09-21 13:01:03] HITS file was successfully produced:
[2024-09-21 13:01:03] -rw------- 1 boinc boinc 165092252 21. Sep 13:00 shared/HITS.pool.root.1
[2024-09-21 13:01:03]  *** Contents of shared directory: ***
[2024-09-21 13:01:03] insgesamt 592200
[2024-09-21 13:01:03] -rw-r--r-- 2 boinc boinc     17539 21. Sep 11:36 start_atlas.sh
[2024-09-21 13:01:03] -rw-r--r-- 2 boinc boinc    495964 21. Sep 11:36 input.tar.gz
[2024-09-21 13:01:03] -rw-r--r-- 2 boinc boinc 440050890 21. Sep 11:36 ATLAS.root_0
[2024-09-21 13:01:03] -rw------- 1 boinc boinc 165092252 21. Sep 13:00 HITS.pool.root.1
[2024-09-21 13:01:03] -rw------- 1 boinc boinc    737280 21. Sep 13:01 result.tar.gz
13:01:05 (875758): run_atlas exited; CPU time 18491.816798
13:01:05 (875758): called boinc_finish(0)

</stderr_txt>
]]>

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