Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-09-20 04:12:01 (13736): Detected: vboxwrapper 26206
2024-09-20 04:12:01 (13736): Detected: BOINC client v7.16.5
2024-09-20 04:12:01 (13736): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-09-20 04:12:02 (13736): Successfully copied 'init_data.xml' to the shared directory.
2024-09-20 04:12:02 (13736): Create VM. (boinc_66b22eca1f37a160, slot#2)
2024-09-20 04:12:03 (13736): Setting Memory Size for VM. (4400MB)
2024-09-20 04:12:03 (13736): Setting CPU Count for VM. (4)
2024-09-20 04:12:03 (13736): Setting Chipset Options for VM.
2024-09-20 04:12:03 (13736): Setting Graphics Controller Options for VM.
2024-09-20 04:12:04 (13736): Setting Boot Options for VM.
2024-09-20 04:12:04 (13736): Setting Network Configuration for NAT.
2024-09-20 04:12:04 (13736): Enabling VM Network Access.
2024-09-20 04:12:05 (13736): Disabling USB Support for VM.
2024-09-20 04:12:05 (13736): Disabling COM Port Support for VM.
2024-09-20 04:12:05 (13736): Disabling LPT Port Support for VM.
2024-09-20 04:12:05 (13736): Disabling Audio Support for VM.
2024-09-20 04:12:06 (13736): Disabling Clipboard Support for VM.
2024-09-20 04:12:06 (13736): Disabling Drag and Drop Support for VM.
2024-09-20 04:12:06 (13736): Adding storage controller(s) to VM.
2024-09-20 04:12:06 (13736): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-09-20 04:12:07 (13736): Adding VirtualBox Guest Additions to VM.
2024-09-20 04:12:07 (13736): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-09-20 04:12:07 (13736): forwarding host port 59398 to guest port 80
2024-09-20 04:12:08 (13736): Enabling remote desktop for VM.
2024-09-20 04:12:08 (13736): Enabling shared directory for VM.
2024-09-20 04:12:09 (13736): Starting VM using VBoxManage interface. (boinc_66b22eca1f37a160, slot#2)
2024-09-20 04:12:13 (13736): Successfully started VM. (PID = '7208')
2024-09-20 04:12:13 (13736): Reporting VM Process ID to BOINC.
2024-09-20 04:12:13 (13736): Guest Log: BIOS: VirtualBox 5.2.44
2024-09-20 04:12:13 (13736): Guest Log: CPUID EDX: 0x178bfbff
2024-09-20 04:12:13 (13736): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-09-20 04:12:13 (13736): VM state change detected. (old = 'poweredoff', new = 'running')
2024-09-20 04:12:13 (13736): Detected: Web Application Enabled (http://localhost:59398)
2024-09-20 04:12:13 (13736): Detected: Remote Desktop Enabled (localhost:59399)
2024-09-20 04:12:13 (13736): Preference change detected
2024-09-20 04:12:13 (13736): Setting CPU throttle for VM. (100%)
2024-09-20 04:12:13 (13736): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-20 04:12:15 (13736): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-09-20 04:12:15 (13736): Guest Log: BIOS: Booting from Hard Disk...
2024-09-20 04:12:18 (13736): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-09-20 04:12:18 (13736): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-09-20 04:12:18 (13736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-09-20 04:12:24 (13736): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-09-20 04:12:24 (13736): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-09-20 04:12:30 (13736): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-09-20 04:12:30 (13736): Guest Log: 00:00:00.000190 main     Log opened 2024-09-20T04:12:28.560531000Z
2024-09-20 04:12:30 (13736): Guest Log: 00:00:00.000296 main     OS Product: Linux
2024-09-20 04:12:30 (13736): Guest Log: 00:00:00.000334 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-09-20 04:12:30 (13736): Guest Log: 00:00:00.000391 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-09-20 04:12:30 (13736): Guest Log: 00:00:00.000420 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-09-20 04:12:30 (13736): Guest Log: 00:00:00.000421 main     Process ID: 1303
2024-09-20 04:12:30 (13736): Guest Log: 00:00:00.000422 main     Package type: LINUX_64BITS_GENERIC
2024-09-20 04:12:30 (13736): Guest Log: 00:00:00.001461 main     5.2.32 r132073 started. Verbose level = 0
2024-09-20 04:12:30 (13736): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-09-20 04:12:30 (13736): Guest Log: [INFO] Mounting shared directory
2024-09-20 04:12:30 (13736): Guest Log: [INFO] Checking for init_data.xml
2024-09-20 04:12:36 (13736): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-09-20 04:12:36 (13736): Guest Log: [INFO] Detected branch: prod
2024-09-20 04:12:36 (13736): Guest Log: This is the prod version of the ATLAS job wrapper
2024-09-20 04:12:36 (13736): Guest Log: Copying input files
2024-09-20 04:12:40 (13736): Guest Log: 00:00:10.003698 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 489 103 000ns (GuestNow=1 726 794 760 073 952 000 ns GuestLast=1 726 805 548 563 055 000 ns fSetTimeLastLoop=true )
2024-09-20 04:12:41 (13736): Guest Log: Copied input files into RunAtlas.
2024-09-20 04:12:42 (13736): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-09-20 04:12:42 (13736): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-09-20 04:12:42 (13736): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-09-20 04:12:42 (13736): Guest Log: Further information can be found at the LHC@home message board.
2024-09-20 04:12:49 (13736): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-09-20 04:12:50 (13736): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-09-20 04:12:50 (13736): Guest Log: 2.6.3.0 1581 0 30160 137431 4 1 3117302 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-09-20 04:12:50 (13736): Guest Log: copied the webapp to /var/www
2024-09-20 04:12:50 (13736): Guest Log: ATHENA_PROC_NUMBER=4
2024-09-20 04:12:50 (13736): Guest Log: ATHENA_CORE_NUMBER=4
2024-09-20 04:12:50 (13736): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-09-20 04:12:50 (13736): Guest Log:  *** Starting ATLAS job. (PandaID=6338159662 taskID=40994252) ***
2024-09-20 05:52:17 (13736): Status Report: Elapsed Time: '6000.000000'
2024-09-20 05:52:17 (13736): Status Report: CPU Time: '17798.781250'
2024-09-20 07:32:20 (13736): Status Report: Elapsed Time: '12000.000000'
2024-09-20 07:32:20 (13736): Status Report: CPU Time: '41677.968750'
2024-09-20 09:12:25 (13736): Status Report: Elapsed Time: '18000.000000'
2024-09-20 09:12:25 (13736): Status Report: CPU Time: '65510.500000'
2024-09-20 10:52:30 (13736): Status Report: Elapsed Time: '24000.000000'
2024-09-20 10:52:30 (13736): Status Report: CPU Time: '89323.328125'
2024-09-20 12:32:35 (13736): Status Report: Elapsed Time: '30000.000000'
2024-09-20 12:32:35 (13736): Status Report: CPU Time: '113119.640625'
2024-09-20 14:12:40 (13736): Status Report: Elapsed Time: '36000.000000'
2024-09-20 14:12:40 (13736): Status Report: CPU Time: '136710.718750'
2024-09-20 15:52:44 (13736): Status Report: Elapsed Time: '42000.000000'
2024-09-20 15:52:44 (13736): Status Report: CPU Time: '158354.234375'
2024-09-20 17:32:48 (13736): Status Report: Elapsed Time: '48000.000000'
2024-09-20 17:32:48 (13736): Status Report: CPU Time: '181067.250000'
2024-09-20 19:05:04 (13736): Guest Log:  *** Job finished ***
2024-09-20 19:05:04 (13736): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:04:48,360 | INFO     | [data] queue_monitor thread has finished
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:04:55,067 | INFO     | job.realtimelogging is not enabled
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:04:56,070 | INFO     | [payload] run_realtimelog thread has finished
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:04:56,224 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140530624907072)>', '<ExcThread(monitor, started 140529316656896)>']
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:04:56,581 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:04:56,581 | INFO     | [monitor] control thread has ended
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,225 | INFO     | all workflow threads have been joined
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,226 | INFO     | end of generic workflow (traces error code: 0)
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,226 | INFO     | traces error code: 0
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,226 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,346 [wrapper] ==== pilot stdout END ====
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,351 [wrapper] ==== wrapper stdout RESUME ====
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,357 [wrapper] pilotpid: 5906
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,362 [wrapper] Pilot exit status: 0
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,455 [wrapper] pandaids: 6338159662
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,490 [wrapper] cleanup supervisor_pilot 12241 5907
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,501 [wrapper] Test setup, not cleaning
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,508 [wrapper] ==== wrapper stdout END ====
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,517 [wrapper] ==== wrapper stderr END ====
2024-09-20 19:05:04 (13736): Guest Log: 2024-09-20 16:05:01,532 [wrapper] apfmon messages muted
2024-09-20 19:05:04 (13736): Guest Log:  *** Error codes and diagnostics ***
2024-09-20 19:05:04 (13736): Guest Log:     "exeErrorCode": 0,
2024-09-20 19:05:04 (13736): Guest Log:     "exeErrorDiag": "",
2024-09-20 19:05:04 (13736): Guest Log:     "pilotErrorCode": 0,
2024-09-20 19:05:04 (13736): Guest Log:     "pilotErrorDiag": "",
2024-09-20 19:05:04 (13736): Guest Log:  *** Listing of results directory ***
2024-09-20 19:05:04 (13736): Guest Log: total 361996
2024-09-20 19:05:04 (13736): Guest Log: -rw-r--r--. 1 atlas atlas    482533 Sep 19 01:24 pilot3.tar.gz
2024-09-20 19:05:04 (13736): Guest Log: -rwx------. 1 atlas atlas     33679 Sep 19 02:08 runpilot2-wrapper.sh
2024-09-20 19:05:04 (13736): Guest Log: -rw-r--r--. 1 atlas atlas      5655 Sep 19 02:08 queuedata.json
2024-09-20 19:05:04 (13736): Guest Log: -rwxr-xr-x. 1 atlas atlas      9161 Sep 20 01:12 init_data.xml
2024-09-20 19:05:04 (13736): Guest Log: -rwxr-xr-x. 1 atlas atlas    495975 Sep 20 01:12 input.tar.gz
2024-09-20 19:05:04 (13736): Guest Log: -rwxr-xr-x. 1 atlas atlas     17539 Sep 20 01:12 start_atlas.sh
2024-09-20 19:05:04 (13736): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Sep 20 01:12 EVNT.40994249._001169.pool.root.1 -> /data/./ATLAS.root_0
2024-09-20 19:05:04 (13736): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Sep 20 01:12 pandaJob.out
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas       424 Sep 20 01:12 setup.sh.local
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas   1010608 Sep 20 01:13 agis_schedconf.cvmfs.json
2024-09-20 19:05:04 (13736): Guest Log: drwx------. 4 atlas atlas      4096 Sep 20 01:13 pilot3
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas 353233355 Sep 20 16:03 HITS.40994252._120935.pool.root.1
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas        95 Sep 20 16:04 pilot_heartbeat.json
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas      1030 Sep 20 16:04 memory_monitor_summary.json
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas   1618603 Sep 20 16:04 agis_ddmendpoints.agis.ALL.json
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas    718300 Sep 20 16:04 log.40994252._120935.job.log.tgz.1
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas      7748 Sep 20 16:04 heartbeat.json
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas      4347 Sep 20 16:05 pilotlog.txt
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas   6114081 Sep 20 16:05 log.40994252._120935.job.log.1
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas       357 Sep 20 16:05 output.list
2024-09-20 19:05:04 (13736): Guest Log: -rw-r--r--. 1 atlas atlas       620 Sep 20 16:05 runtime_log
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas   6850560 Sep 20 16:05 result.tar.gz
2024-09-20 19:05:04 (13736): Guest Log: -rw-r--r--. 1 atlas atlas     10968 Sep 20 16:05 runtime_log.err
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas       663 Sep 20 16:05 ODOMDmqlLB6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmKQaKDmQwtgNm.diag
2024-09-20 19:05:04 (13736): Guest Log: Looking for outputfile HITS.40994252._120935.pool.root.1
2024-09-20 19:05:04 (13736): Guest Log: HITS file was successfully produced
2024-09-20 19:05:04 (13736): Guest Log: -rw-------. 1 atlas atlas 353233355 Sep 20 16:03 /home/atlas/RunAtlas/HITS.40994252._120935.pool.root.1
2024-09-20 19:05:07 (13736): Guest Log: Successfully finished the ATLAS job!
2024-09-20 19:05:07 (13736): Guest Log: Copying the results back to the shared directory!
2024-09-20 19:05:07 (13736): Guest Log:  *** Contents of shared directory: ***
2024-09-20 19:05:07 (13736): Guest Log: total 856924
2024-09-20 19:05:07 (13736): Guest Log: -rwxrwxrwx. 1 root root 516866863 Sep 20 01:12 ATLAS.root_0
2024-09-20 19:05:07 (13736): Guest Log: -rwxrwxrwx. 1 root root 353233355 Sep 20 16:05 HITS.pool.root.1
2024-09-20 19:05:07 (13736): Guest Log: -rwxrwxrwx. 1 root root      9161 Sep 20 01:12 init_data.xml
2024-09-20 19:05:07 (13736): Guest Log: -rwxrwxrwx. 1 root root    495975 Sep 19 02:08 input.tar.gz
2024-09-20 19:05:07 (13736): Guest Log: -rwxrwxrwx. 1 root root   6850560 Sep 20 16:05 result.tar.gz
2024-09-20 19:05:07 (13736): Guest Log: -rwxrwxrwx. 1 root root     17539 Sep 19 02:08 start_atlas.sh
2024-09-20 19:05:07 (13736): Guest Log:  *** Success! Shutting down the machine. ***
2024-09-20 19:05:07 (13736): VM Completion File Detected.
2024-09-20 19:05:07 (13736): Powering off VM.
2024-09-20 19:05:08 (13736): Successfully stopped VM.
2024-09-20 19:05:08 (13736): Deregistering VM. (boinc_66b22eca1f37a160, slot#2)
2024-09-20 19:05:08 (13736): Removing network bandwidth throttle group from VM.
2024-09-20 19:05:08 (13736): Removing VM from VirtualBox.
19:05:13 (13736): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN