Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
2024-09-20 12:49:05 (2856): Detected: vboxwrapper 26206
2024-09-20 12:49:05 (2856): Detected: BOINC client v7.16.5
2024-09-20 12:49:05 (2856): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2024-09-20 12:49:06 (2856): Successfully copied 'init_data.xml' to the shared directory.
2024-09-20 12:49:06 (2856): Create VM. (boinc_9e257cceb706ce37, slot#6)
2024-09-20 12:49:07 (2856): Setting Memory Size for VM. (4400MB)
2024-09-20 12:49:07 (2856): Setting CPU Count for VM. (4)
2024-09-20 12:49:07 (2856): Setting Chipset Options for VM.
2024-09-20 12:49:07 (2856): Setting Graphics Controller Options for VM.
2024-09-20 12:49:08 (2856): Setting Boot Options for VM.
2024-09-20 12:49:08 (2856): Setting Network Configuration for NAT.
2024-09-20 12:49:08 (2856): Enabling VM Network Access.
2024-09-20 12:49:08 (2856): Disabling USB Support for VM.
2024-09-20 12:49:09 (2856): Disabling COM Port Support for VM.
2024-09-20 12:49:09 (2856): Disabling LPT Port Support for VM.
2024-09-20 12:49:09 (2856): Disabling Audio Support for VM.
2024-09-20 12:49:09 (2856): Disabling Clipboard Support for VM.
2024-09-20 12:49:10 (2856): Disabling Drag and Drop Support for VM.
2024-09-20 12:49:10 (2856): Adding storage controller(s) to VM.
2024-09-20 12:49:10 (2856): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-09-20 12:49:11 (2856): Adding VirtualBox Guest Additions to VM.
2024-09-20 12:49:11 (2856): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-09-20 12:49:11 (2856): forwarding host port 62515 to guest port 80
2024-09-20 12:49:12 (2856): Enabling remote desktop for VM.
2024-09-20 12:49:12 (2856): Enabling shared directory for VM.
2024-09-20 12:49:13 (2856): Starting VM using VBoxManage interface. (boinc_9e257cceb706ce37, slot#6)
2024-09-20 12:49:17 (2856): Successfully started VM. (PID = '5860')
2024-09-20 12:49:17 (2856): Reporting VM Process ID to BOINC.
2024-09-20 12:49:17 (2856): Guest Log: BIOS: VirtualBox 5.2.44
2024-09-20 12:49:17 (2856): Guest Log: CPUID EDX: 0x178bfbff
2024-09-20 12:49:17 (2856): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-09-20 12:49:17 (2856): VM state change detected. (old = 'poweredoff', new = 'running')
2024-09-20 12:49:17 (2856): Detected: Web Application Enabled (http://localhost:62515)
2024-09-20 12:49:17 (2856): Detected: Remote Desktop Enabled (localhost:62516)
2024-09-20 12:49:17 (2856): Preference change detected
2024-09-20 12:49:17 (2856): Setting CPU throttle for VM. (100%)
2024-09-20 12:49:18 (2856): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2024-09-20 12:49:19 (2856): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-09-20 12:49:19 (2856): Guest Log: BIOS: Booting from Hard Disk...
2024-09-20 12:49:22 (2856): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-09-20 12:49:22 (2856): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-09-20 12:49:22 (2856): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-09-20 12:49:27 (2856): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-09-20 12:49:27 (2856): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-09-20 12:49:34 (2856): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-09-20 12:49:34 (2856): Guest Log: 00:00:00.000224 main     Log opened 2024-09-20T12:49:31.973605000Z
2024-09-20 12:49:34 (2856): Guest Log: 00:00:00.000371 main     OS Product: Linux
2024-09-20 12:49:34 (2856): Guest Log: 00:00:00.000422 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-09-20 12:49:34 (2856): Guest Log: 00:00:00.000464 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-09-20 12:49:34 (2856): Guest Log: 00:00:00.000501 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-09-20 12:49:34 (2856): Guest Log: 00:00:00.000502 main     Process ID: 1302
2024-09-20 12:49:34 (2856): Guest Log: 00:00:00.000503 main     Package type: LINUX_64BITS_GENERIC
2024-09-20 12:49:34 (2856): Guest Log: 00:00:00.002046 main     5.2.32 r132073 started. Verbose level = 0
2024-09-20 12:49:34 (2856): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-09-20 12:49:34 (2856): Guest Log: [INFO] Mounting shared directory
2024-09-20 12:49:34 (2856): Guest Log: [INFO] Checking for init_data.xml
2024-09-20 12:49:39 (2856): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-09-20 12:49:39 (2856): Guest Log: [INFO] Detected branch: prod
2024-09-20 12:49:39 (2856): Guest Log: This is the prod version of the ATLAS job wrapper
2024-09-20 12:49:39 (2856): Guest Log: Copying input files
2024-09-20 12:49:44 (2856): Guest Log: 00:00:10.003937 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 165 368 000ns (GuestNow=1 726 825 783 811 456 000 ns GuestLast=1 726 836 571 976 824 000 ns fSetTimeLastLoop=true )
2024-09-20 12:49:44 (2856): Guest Log: Copied input files into RunAtlas.
2024-09-20 12:49:44 (2856): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-09-20 12:49:44 (2856): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-09-20 12:49:44 (2856): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-09-20 12:49:44 (2856): Guest Log: Further information can be found at the LHC@home message board.
2024-09-20 12:49:53 (2856): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-09-20 12:49:54 (2856): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-09-20 12:49:54 (2856): Guest Log: 2.6.3.0 1579 0 32188 137447 4 1 3117432 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-09-20 12:49:55 (2856): Guest Log: copied the webapp to /var/www
2024-09-20 12:49:55 (2856): Guest Log: ATHENA_PROC_NUMBER=4
2024-09-20 12:49:55 (2856): Guest Log: ATHENA_CORE_NUMBER=4
2024-09-20 12:49:56 (2856): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-09-20 12:49:56 (2856): Guest Log:  *** Starting ATLAS job. (PandaID=6338159653 taskID=40994252) ***
2024-09-20 14:29:22 (2856): Status Report: Elapsed Time: '6000.000000'
2024-09-20 14:29:22 (2856): Status Report: CPU Time: '14063.796875'
2024-09-20 16:09:26 (2856): Status Report: Elapsed Time: '12000.000000'
2024-09-20 16:09:26 (2856): Status Report: CPU Time: '35478.593750'
2024-09-20 17:49:30 (2856): Status Report: Elapsed Time: '18000.000000'
2024-09-20 17:49:30 (2856): Status Report: CPU Time: '47052.890625'
2024-09-20 19:29:34 (2856): Status Report: Elapsed Time: '24000.000000'
2024-09-20 19:29:34 (2856): Status Report: CPU Time: '63700.343750'
2024-09-20 21:09:38 (2856): Status Report: Elapsed Time: '30000.000000'
2024-09-20 21:09:38 (2856): Status Report: CPU Time: '86400.671875'
2024-09-20 22:49:42 (2856): Status Report: Elapsed Time: '36000.000000'
2024-09-20 22:49:42 (2856): Status Report: CPU Time: '110150.578125'
2024-09-21 00:29:47 (2856): Status Report: Elapsed Time: '42000.000000'
2024-09-21 00:29:47 (2856): Status Report: CPU Time: '133950.750000'
2024-09-21 02:09:51 (2856): Status Report: Elapsed Time: '48000.000000'
2024-09-21 02:09:51 (2856): Status Report: CPU Time: '156265.750000'
2024-09-21 03:49:55 (2856): Status Report: Elapsed Time: '54000.000000'
2024-09-21 03:49:55 (2856): Status Report: CPU Time: '180045.000000'
2024-09-21 05:30:04 (2856): Status Report: Elapsed Time: '60000.000000'
2024-09-21 05:30:04 (2856): Status Report: CPU Time: '202556.812500'
2024-09-21 05:32:56 (2856): Guest Log:  *** Job finished ***
2024-09-21 05:32:56 (2856): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:42,892 | INFO     | [data] copytool_out thread has finished
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:43,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:47,165 | INFO     | [data] queue_monitor thread has finished
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:48,233 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139960206337856)>', '<ExcThread(monitor, started 139959989925632)>']
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:48,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:48,311 | INFO     | [monitor] control thread has ended
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,237 | INFO     | all workflow threads have been joined
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,237 | INFO     | end of generic workflow (traces error code: 0)
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,238 | INFO     | traces error code: 0
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,379 [wrapper] ==== pilot stdout END ====
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,385 [wrapper] ==== wrapper stdout RESUME ====
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,397 [wrapper] pilotpid: 5936
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,422 [wrapper] Pilot exit status: 0
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,526 [wrapper] pandaids: 6338159653
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,623 [wrapper] cleanup supervisor_pilot 19363 5937
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,628 [wrapper] Test setup, not cleaning
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,633 [wrapper] ==== wrapper stdout END ====
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,648 [wrapper] ==== wrapper stderr END ====
2024-09-21 05:32:56 (2856): Guest Log: 2024-09-21 02:32:53,683 [wrapper] apfmon messages muted
2024-09-21 05:32:56 (2856): Guest Log:  *** Error codes and diagnostics ***
2024-09-21 05:32:56 (2856): Guest Log:     "exeErrorCode": 0,
2024-09-21 05:32:56 (2856): Guest Log:     "exeErrorDiag": "",
2024-09-21 05:32:56 (2856): Guest Log:     "pilotErrorCode": 0,
2024-09-21 05:32:56 (2856): Guest Log:     "pilotErrorDiag": "",
2024-09-21 05:32:56 (2856): Guest Log:  *** Listing of results directory ***
2024-09-21 05:32:56 (2856): Guest Log: total 373824
2024-09-21 05:32:56 (2856): Guest Log: -rw-r--r--. 1 atlas atlas    482533 Sep 19 01:24 pilot3.tar.gz
2024-09-21 05:32:56 (2856): Guest Log: -rwx------. 1 atlas atlas     33679 Sep 19 02:08 runpilot2-wrapper.sh
2024-09-21 05:32:56 (2856): Guest Log: -rw-r--r--. 1 atlas atlas      5655 Sep 19 02:08 queuedata.json
2024-09-21 05:32:56 (2856): Guest Log: -rwxr-xr-x. 1 atlas atlas      9161 Sep 20 09:49 init_data.xml
2024-09-21 05:32:56 (2856): Guest Log: -rwxr-xr-x. 1 atlas atlas    495978 Sep 20 09:49 input.tar.gz
2024-09-21 05:32:56 (2856): Guest Log: -rwxr-xr-x. 1 atlas atlas     17539 Sep 20 09:49 start_atlas.sh
2024-09-21 05:32:56 (2856): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Sep 20 09:49 EVNT.40994249._001871.pool.root.1 -> /data/./ATLAS.root_0
2024-09-21 05:32:56 (2856): Guest Log: -rw-r--r--. 1 atlas atlas      2577 Sep 20 09:49 pandaJob.out
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas       424 Sep 20 09:50 setup.sh.local
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas   1010599 Sep 20 09:54 agis_schedconf.cvmfs.json
2024-09-21 05:32:56 (2856): Guest Log: drwx------. 4 atlas atlas      4096 Sep 20 09:55 pilot3
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas 359489131 Sep 21 02:31 HITS.40994252._120932.pool.root.1
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas        95 Sep 21 02:32 pilot_heartbeat.json
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas      1030 Sep 21 02:32 memory_monitor_summary.json
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas   1618603 Sep 21 02:32 agis_ddmendpoints.agis.ALL.json
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas    856502 Sep 21 02:32 log.40994252._120932.job.log.tgz.1
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas      7752 Sep 21 02:32 heartbeat.json
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas      4461 Sep 21 02:32 pilotlog.txt
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas   8901517 Sep 21 02:32 log.40994252._120932.job.log.1
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas       357 Sep 21 02:32 output.list
2024-09-21 05:32:56 (2856): Guest Log: -rw-r--r--. 1 atlas atlas       620 Sep 21 02:32 runtime_log
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas   9779200 Sep 21 02:32 result.tar.gz
2024-09-21 05:32:56 (2856): Guest Log: -rw-r--r--. 1 atlas atlas     10968 Sep 21 02:32 runtime_log.err
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas       663 Sep 21 02:32 iWEMDmqlLB6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmHQaKDmFT7APm.diag
2024-09-21 05:32:56 (2856): Guest Log: Looking for outputfile HITS.40994252._120932.pool.root.1
2024-09-21 05:32:56 (2856): Guest Log: HITS file was successfully produced
2024-09-21 05:32:56 (2856): Guest Log: -rw-------. 1 atlas atlas 359489131 Sep 21 02:31 /home/atlas/RunAtlas/HITS.40994252._120932.pool.root.1
2024-09-21 05:32:59 (2856): Guest Log: Successfully finished the ATLAS job!
2024-09-21 05:32:59 (2856): Guest Log: Copying the results back to the shared directory!
2024-09-21 05:32:59 (2856): Guest Log:  *** Contents of shared directory: ***
2024-09-21 05:32:59 (2856): Guest Log: total 864376
2024-09-21 05:32:59 (2856): Guest Log: -rwxrwxrwx. 1 root root 515315724 Sep 20 09:49 ATLAS.root_0
2024-09-21 05:32:59 (2856): Guest Log: -rwxrwxrwx. 1 root root 359489131 Sep 21 02:32 HITS.pool.root.1
2024-09-21 05:32:59 (2856): Guest Log: -rwxrwxrwx. 1 root root      9161 Sep 20 09:49 init_data.xml
2024-09-21 05:32:59 (2856): Guest Log: -rwxrwxrwx. 1 root root    495978 Sep 19 02:08 input.tar.gz
2024-09-21 05:32:59 (2856): Guest Log: -rwxrwxrwx. 1 root root   9779200 Sep 21 02:32 result.tar.gz
2024-09-21 05:32:59 (2856): Guest Log: -rwxrwxrwx. 1 root root     17539 Sep 19 02:08 start_atlas.sh
2024-09-21 05:32:59 (2856): Guest Log:  *** Success! Shutting down the machine. ***
2024-09-21 05:32:59 (2856): VM Completion File Detected.
2024-09-21 05:32:59 (2856): Powering off VM.
2024-09-21 05:33:00 (2856): Successfully stopped VM.
2024-09-21 05:33:00 (2856): Deregistering VM. (boinc_9e257cceb706ce37, slot#6)
2024-09-21 05:33:00 (2856): Removing network bandwidth throttle group from VM.
2024-09-21 05:33:00 (2856): Removing VM from VirtualBox.
05:33:05 (2856): called boinc_finish(0)

</stderr_txt>
]]>

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