1) Message boards : Number crunching : invalid results (Message 47659)
Posted 12 Jan 2023 by kcharuso
Post:
hi all,

i seems to have lots of invalid results but i do not know why and i have limited knowledge regarding what the log file say but below is the report from one of the invalid work unit. please assist, thank you :)

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-01-12 13:37:19 (17220): Detected: vboxwrapper 26206
2023-01-12 13:37:19 (17220): Detected: BOINC client v7.20.2
2023-01-12 13:37:20 (17220): Detected: VirtualBox VboxManage Interface (Version: 7.0.4)
2023-01-12 13:37:20 (17220): Successfully copied 'init_data.xml' to the shared directory.
2023-01-12 13:37:21 (17220): Create VM. (boinc_5deb979876a75273, slot#4)
2023-01-12 13:37:21 (17220): Setting Memory Size for VM. (10200MB)
2023-01-12 13:37:22 (17220): Setting CPU Count for VM. (8)
2023-01-12 13:37:22 (17220): Setting Chipset Options for VM.
2023-01-12 13:37:22 (17220): Setting Graphics Controller Options for VM.
2023-01-12 13:37:22 (17220): Setting Boot Options for VM.
2023-01-12 13:37:23 (17220): Setting Network Configuration for NAT.
2023-01-12 13:37:23 (17220): Enabling VM Network Access.
2023-01-12 13:37:23 (17220): Disabling USB Support for VM.
2023-01-12 13:37:23 (17220): Disabling COM Port Support for VM.
2023-01-12 13:37:24 (17220): Disabling LPT Port Support for VM.
2023-01-12 13:37:24 (17220): Disabling Audio Support for VM.
2023-01-12 13:37:24 (17220): Disabling Clipboard Support for VM.
2023-01-12 13:37:24 (17220): Disabling Drag and Drop Support for VM.
2023-01-12 13:37:25 (17220): Adding storage controller(s) to VM.
2023-01-12 13:37:25 (17220): Adding virtual disk drive to VM. (ATLAS_vbox_2.03_image.vdi)
2023-01-12 13:37:25 (17220): Adding VirtualBox Guest Additions to VM.
2023-01-12 13:37:26 (17220): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-01-12 13:37:26 (17220): forwarding host port 50809 to guest port 80
2023-01-12 13:37:26 (17220): Enabling remote desktop for VM.
2023-01-12 13:37:27 (17220): Enabling shared directory for VM.
2023-01-12 13:37:27 (17220): Starting VM using VBoxManage interface. (boinc_5deb979876a75273, slot#4)
2023-01-12 13:37:33 (17220): Successfully started VM. (PID = '9592')
2023-01-12 13:37:33 (17220): Reporting VM Process ID to BOINC.
2023-01-12 13:37:33 (17220): Guest Log: BIOS: VirtualBox 7.0.4
2023-01-12 13:37:33 (17220): Guest Log: CPUID EDX: 0x178bfbff
2023-01-12 13:37:33 (17220): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-01-12 13:37:33 (17220): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-01-12 13:37:33 (17220): VM state change detected. (old = 'poweredoff', new = 'running')
2023-01-12 13:37:33 (17220): Detected: Web Application Enabled (http://localhost:50809)
2023-01-12 13:37:33 (17220): Detected: Remote Desktop Enabled (localhost:50810)
2023-01-12 13:37:33 (17220): Preference change detected
2023-01-12 13:37:33 (17220): Setting CPU throttle for VM. (100%)
2023-01-12 13:37:33 (17220): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2023-01-12 13:37:35 (17220): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-01-12 13:37:35 (17220): Guest Log: BIOS: Booting from Hard Disk...
2023-01-12 13:37:38 (17220): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-01-12 13:37:38 (17220): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-01-12 13:37:38 (17220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-01-12 13:37:42 (17220): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-01-12 13:37:42 (17220): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-01-12 13:37:46 (17220): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-01-12 13:37:46 (17220): Guest Log: 00:00:00.000125 main Log opened 2023-01-12T13:37:43.778629000Z
2023-01-12 13:37:46 (17220): Guest Log: 00:00:00.000196 main OS Product: Linux
2023-01-12 13:37:46 (17220): Guest Log: 00:00:00.000215 main OS Release: 3.10.0-957.27.2.el7.x86_64
2023-01-12 13:37:46 (17220): Guest Log: 00:00:00.000231 main OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-01-12 13:37:46 (17220): Guest Log: 00:00:00.000247 main Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-01-12 13:37:46 (17220): Guest Log: 00:00:00.000247 main Process ID: 1535
2023-01-12 13:37:46 (17220): Guest Log: 00:00:00.000248 main Package type: LINUX_64BITS_GENERIC
2023-01-12 13:37:46 (17220): Guest Log: 00:00:00.000993 main 5.2.32 r132073 started. Verbose level = 0
2023-01-12 13:37:46 (17220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-01-12 13:37:46 (17220): Guest Log: [INFO] Mounting shared directory
2023-01-12 13:37:46 (17220): Guest Log: [INFO] Checking for init_data.xml
2023-01-12 13:37:48 (17220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-01-12 13:37:48 (17220): Guest Log: [INFO] Detected branch: prod
2023-01-12 13:37:49 (17220): Guest Log: This is the prod version of the ATLAS job wrapper
2023-01-12 13:37:49 (17220): Guest Log: Copying input files
2023-01-12 13:37:50 (17220): Guest Log: Copied input files into RunAtlas.
2023-01-12 13:37:50 (17220): Guest Log: This VM did not configure a local http proxy via BOINC.
2023-01-12 13:37:50 (17220): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2023-01-12 13:37:50 (17220): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2023-01-12 13:37:50 (17220): Guest Log: Further information can be found at the LHC@home message board.
2023-01-12 13:37:56 (17220): Guest Log: 00:00:10.023476 timesync vgsvcTimeSyncWorker: Radical guest time change: -25 188 215 977 000ns (GuestNow=1 673 505 475 564 484 000 ns GuestLast=1 673 530 663 780 461 000 ns fSetTimeLastLoop=true )
2023-01-12 13:37:58 (17220): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-01-12 13:37:58 (17220): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-01-12 13:37:58 (17220): Guest Log: 2.6.3.0 1811 0 32192 114452 4 1 1522681 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2023-01-12 13:37:59 (17220): Guest Log: copied the webapp to /var/www
2023-01-12 13:37:59 (17220): Guest Log: ATHENA_PROC_NUMBER=8
2023-01-12 13:37:59 (17220): Guest Log: *** Starting ATLAS job. (PandaID=5714143078 taskID=31766465) ***
2023-01-12 13:39:28 (17220): Preference change detected
2023-01-12 13:39:28 (17220): Setting CPU throttle for VM. (100%)
2023-01-12 13:39:28 (17220): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2023-01-12 13:43:14 (17220): Guest Log: *** Job finished ***
2023-01-12 13:43:14 (17220): Guest Log: *** The last 20 lines of the pilot log: ***
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:05,434 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:07,780 | WARNING | no jobs in monitored_payloads queue (waited for 61 s)
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:07,781 | INFO | [job] job monitor thread has finished
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:08,451 | INFO | [data] queue_monitor thread has finished
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,597 | INFO | job.realtimelogging is not enabled
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,597 | INFO | [payload] run_realtimelog thread has finished
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,800 | INFO | end of generic workflow (traces error code: 0)
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,800 | INFO | traces error code: 0
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,800 | INFO | pilot has finished
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,838 [wrapper] ==== pilot stdout END ====
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,843 [wrapper] ==== wrapper stdout RESUME ====
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,845 [wrapper] pilotpid: 7163
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,846 [wrapper] Pilot exit status: 0
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,851 [wrapper] pandaids: 5714143078
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,853 [wrapper] apfmon messages muted
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,854 [wrapper] Test setup, not cleaning
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,855 [wrapper] ==== wrapper stdout END ====
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,856 [wrapper] ==== wrapper stderr END ====
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,858 [wrapper] wrapperexiting ec=0, duration=315
2023-01-12 13:43:14 (17220): Guest Log: 2023-01-12 06:43:13,859 [wrapper] apfmon messages muted
2023-01-12 13:43:14 (17220): Guest Log: *** Error codes and diagnostics ***
2023-01-12 13:43:14 (17220): Guest Log: "exeErrorCode": 65,
2023-01-12 13:43:14 (17220): Guest Log: "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"DetectorStore FATAL in sysInitialize(): standard std::exception is caught\"",
2023-01-12 13:43:14 (17220): Guest Log: "pilotErrorCode": 1165,
2023-01-12 13:43:14 (17220): Guest Log: "pilotErrorDiag": "Local output file is missing",
2023-01-12 13:43:14 (17220): Guest Log: *** Listing of results directory ***
2023-01-12 13:43:14 (17220): Guest Log: total 3808
2023-01-12 13:43:14 (17220): Guest Log: -rw-r--r--. 1 atlas atlas 379728 Jan 11 14:32 pilot3.tar.gz
2023-01-12 13:43:14 (17220): Guest Log: -rw-r--r--. 1 atlas atlas 6329 Jan 11 15:30 queuedata.json
2023-01-12 13:43:14 (17220): Guest Log: -rwx------. 1 atlas atlas 26318 Jan 11 15:32 runpilot2-wrapper.sh
2023-01-12 13:43:14 (17220): Guest Log: -rwxr-xr-x. 1 atlas atlas 11913 Jan 12 06:37 init_data.xml
2023-01-12 13:43:14 (17220): Guest Log: -rwxr-xr-x. 1 atlas atlas 391450 Jan 12 06:37 input.tar.gz
2023-01-12 13:43:14 (17220): Guest Log: -rwxr-xr-x. 1 atlas atlas 17681 Jan 12 06:37 start_atlas.sh
2023-01-12 13:43:14 (17220): Guest Log: lrwxrwxrwx. 1 atlas atlas 20 Jan 12 06:37 EVNT.31550708._000932.pool.root.1 -> /data/./ATLAS.root_0
2023-01-12 13:43:14 (17220): Guest Log: -rw-r--r--. 1 atlas atlas 2854 Jan 12 06:37 pandaJob.out
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 416 Jan 12 06:37 setup.sh.local
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 1036205 Jan 12 06:38 agis_schedconf.cvmfs.json
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 1704033 Jan 12 06:38 agis_ddmendpoints.agis.ALL.json
2023-01-12 13:43:14 (17220): Guest Log: drwx------. 4 atlas atlas 245 Jan 12 06:38 pilot3
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 1003 Jan 12 06:40 memory_monitor_summary.json
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 51007 Jan 12 06:41 log.31766465._047094.job.log.tgz.1
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 9229 Jan 12 06:42 heartbeat.json
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 2876 Jan 12 06:43 pilotlog.txt
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 66274 Jan 12 06:43 log.31766465._047094.job.log.1
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 186 Jan 12 06:43 output.list
2023-01-12 13:43:14 (17220): Guest Log: -rw-r--r--. 1 atlas atlas 620 Jan 12 06:43 runtime_log
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 133120 Jan 12 06:43 result.tar.gz
2023-01-12 13:43:14 (17220): Guest Log: -rw-r--r--. 1 atlas atlas 9487 Jan 12 06:43 runtime_log.err
2023-01-12 13:43:14 (17220): Guest Log: -rw-------. 1 atlas atlas 625 Jan 12 06:43 CRANDmtGsZ2nsSi4apGgGQJmABFKDmABFKDmZ3vUDmvipKDm1WfhXn.diag
2023-01-12 13:43:14 (17220): Guest Log: Looking for outputfile HITS.31766465._047094.pool.root.1
2023-01-12 13:43:14 (17220): Guest Log: No HITS file was produced
2023-01-12 13:43:14 (17220): Guest Log: Successfully finished the ATLAS job!
2023-01-12 13:43:14 (17220): Guest Log: Copying the results back to the shared directory!
2023-01-12 13:43:14 (17220): Guest Log: *** Contents of shared directory: ***
2023-01-12 13:43:14 (17220): Guest Log: total 452452
2023-01-12 13:43:14 (17220): Guest Log: -rwxrwxrwx. 1 root root 462748742 Jan 12 06:37 ATLAS.root_0
2023-01-12 13:43:14 (17220): Guest Log: -rwxrwxrwx. 1 root root 11913 Jan 12 06:37 init_data.xml
2023-01-12 13:43:14 (17220): Guest Log: -rwxrwxrwx. 1 root root 391450 Jan 12 06:31 input.tar.gz
2023-01-12 13:43:14 (17220): Guest Log: -rwxrwxrwx. 1 root root 133120 Jan 12 2023 result.tar.gz
2023-01-12 13:43:14 (17220): Guest Log: -rwxrwxrwx. 1 root root 17681 Jan 12 06:31 start_atlas.sh
2023-01-12 13:43:14 (17220): Guest Log: *** Success! Shutting down the machine. ***
2023-01-12 13:43:14 (17220): VM Completion File Detected.
2023-01-12 13:43:14 (17220): Powering off VM.
2023-01-12 13:43:14 (17220): Successfully stopped VM.
2023-01-12 13:43:14 (17220): Deregistering VM. (boinc_5deb979876a75273, slot#4)
2023-01-12 13:43:14 (17220): Removing network bandwidth throttle group from VM.
2023-01-12 13:43:14 (17220): Removing VM from VirtualBox.
13:43:20 (17220): called boinc_finish(0)

</stderr_txt>
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