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Jim1348

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Message 42826 - Posted: 10 Jun 2020, 18:31:35 UTC - in response to Message 36880.  

Again, feel free to report mistakes, improvements, ask questions, make any suggestions, etc. It would be much appreciated!

OK, I will. While this has worked several times for me, on my latest installation of Singularity (on Ubuntu 18.04.4), when running "make" I get:
go: updates to go.sum needed, disabled by -mod=readonly

My small amount of searching indicates that some people think this is a feature, not a bug. That is not much help however.
Thanks if you can fix it.
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Jim1348

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Message 42851 - Posted: 12 Jun 2020, 18:20:27 UTC - in response to Message 42826.  

Problem solved, maybe.
I have been able to install Singularity 3.5.3 using these instructions:
https://sylabs.io/guides/3.0/user-guide/installation.html

Now we just need native ATLAS to work. One step at a time.
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Jim1348

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Message 44486 - Posted: 14 Mar 2021, 22:33:42 UTC - in response to Message 42851.  

Problem solved, maybe.
That procedure no longer works for me on my latest Ubuntu 20.04.2 build, but this one does.
https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=5616&postid=44485#44485

It is actually simpler, and gives you a recent version of GO, along with the latest version (3.7.2) of Singularity.
Lots of luck.
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M0CZY
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Message 45016 - Posted: 27 May 2021, 12:32:03 UTC - in response to Message 44486.  

I want to update my old version of Singularity for the latest version for Atlas workunits.
Should I install Singularity 3.7.4, or SingularityCE 3.8.0 ? Which version is correct for Boinc?
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Profile F6FGZ looking for DX !

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Message 45019 - Posted: 27 May 2021, 20:45:19 UTC - in response to Message 45016.  
Last modified: 27 May 2021, 20:47:26 UTC

Singularity 3.7.3 is current.
I updated the procedure mentioned above.
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vigilian

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Message 45027 - Posted: 28 May 2021, 6:55:16 UTC - in response to Message 45019.  

Singularity 3.7.3 is current.
I updated the procedure mentioned above.



which go version did yo use? because @computezrmle mentioned in another thread that he tried 1.15 and it didn't work but 1.14 was working. I just tried to build the dependencies for go 1.14.5 which is an archived version and I can get all the deps. So did you use the last go version and succeeded to build singularity? or did you use an older one?
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vigilian

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Message 45028 - Posted: 28 May 2021, 7:02:01 UTC - in response to Message 45027.  

Singularity 3.7.3 is current.
I updated the procedure mentioned above.



which go version did yo use? because @computezrmle mentioned in another thread that he tried 1.15 and it didn't work but 1.14 was working. I just tried to build the dependencies for go 1.14.5 which is an archived version and I can get all the deps. So did you use the last go version and succeeded to build singularity? or did you use an older one?



github.com/golang/dep/gps
# github.com/golang/dep/gps
/root/go/pkg/mod/github.com/golang/dep@v0.5.4/gps/constraint.go:103:21: cannot use sv (type *semver.Version) as type semver.Version in field value
/root/go/pkg/mod/github.com/golang/dep@v0.5.4/gps/constraint.go:122:16: invalid type assertion: c.(semver.Version) (non-interface type *semver.Constraints on left)
/root/go/pkg/mod/github.com/golang/dep@v0.5.4/gps/constraint.go:149:4: undefined: semver.Constraint

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vigilian

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Message 45032 - Posted: 28 May 2021, 11:11:19 UTC - in response to Message 45028.  

no okey I didn't notice that you were referencing another step by step than the original post from this thread. With yours I 've succeeded to install 3.7.2 :)
thanks
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Message 45345 - Posted: 16 Sep 2021, 8:50:22 UTC - in response to Message 45032.  

Greetings All

Had to rebuild one of my workstations, some of the computer details are as follows

Computer - ID: 10695708
Linux Mint 20.2
Kernel Version - 5.4.0-84
Boinc Version - 7.16.6
GO Version - go1.17.1
Singularity Version - 3.8.0-rc.1+287-g5a02820ef

Followed the instructions at the start of this thread, so I could do Atlas Native Tasks.

I installed all the packages, then started from Build and install cvmfs, however it did stop during make, as I needed to install python-setuptools.

Then I ran the make command again and then it continued successfully.

Completed this workunit successfully - https://lhcathome.cern.ch/lhcathome/result.php?resultid=325379002

Cheers
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Ryan Munro

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Message 46437 - Posted: 14 Mar 2022, 11:46:13 UTC

Hi,

I got to section 4, I ran cmake ../ and it completed with errors:

-- Configuring incomplete, errors occurred!
See also "/home/ryan/cvmfs_source/build/CMakeFiles/CMakeOutput.log".

Logfile output below, any ideas?

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Build flags: 
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The output was:
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Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out"

The C compiler identification is GNU, found in "/home/ryan/cvmfs_source/build/CMakeFiles/3.16.3/CompilerIdC/a.out"

Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded.
Compiler: /usr/bin/c++ 
Build flags: 
Id flags:  

The output was:
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Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out"

The CXX compiler identification is GNU, found in "/home/ryan/cvmfs_source/build/CMakeFiles/3.16.3/CompilerIdCXX/a.out"

Determining if the C compiler works passed with the following output:
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Evangelos Katikos

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Message 46438 - Posted: 14 Mar 2022, 16:51:45 UTC - in response to Message 46437.  

Why would you want to do anything of what is described in the first post? For cvmfs go to https://cvmfs.readthedocs.io/en/stable/cpt-quickstart.html#getting-the-software

For everything else described in the first post there are ready made packages. This shouldn't be a sticky thread.
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Ryan Munro

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Message 46439 - Posted: 14 Mar 2022, 17:03:22 UTC - in response to Message 46438.  

Is there a better guide for us noobs on which packages and where to get them?
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Evangelos Katikos

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Message 46440 - Posted: 14 Mar 2022, 17:34:14 UTC - in response to Message 46439.  

For boinc go to https://boinc.berkeley.edu/download_all.php

cvmfs I've written above.

Singularity should exist in your repositories. singularity-container or something like that is called.
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Ryan Munro

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Message 46441 - Posted: 14 Mar 2022, 22:46:56 UTC - in response to Message 46440.  

Singularity is not installed but its using the one from CVMFS, a quick Google seems to indicate this should be fine?
The app still fails about 12 mins in though, any ideas?

https://lhcathome.cern.ch/lhcathome/result.php?resultid=349039958 an example.
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maeax

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Message 46442 - Posted: 14 Mar 2022, 23:28:20 UTC - in response to Message 46441.  
Last modified: 14 Mar 2022, 23:39:56 UTC

This wrote David:https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=5647&postid=45272#45272
It's better to wrote in a own thread: this is a guide.
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